View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16728_low_2 (Length: 525)

Name: NF16728_low_2
Description: NF16728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16728_low_2
NF16728_low_2
[»] chr5 (16 HSPs)
chr5 (15-447)||(2392589-2393025)
chr5 (469-505)||(13561481-13561517)
chr5 (469-505)||(14911323-14911359)
chr5 (473-505)||(16347473-16347505)
chr5 (472-510)||(36215642-36215680)
chr5 (472-505)||(1287674-1287707)
chr5 (479-508)||(2393038-2393067)
chr5 (472-505)||(2915590-2915623)
chr5 (472-505)||(3301998-3302031)
chr5 (472-505)||(4496538-4496571)
chr5 (472-505)||(10639456-10639489)
chr5 (472-505)||(12492479-12492512)
chr5 (472-505)||(16913978-16914011)
chr5 (472-505)||(29816536-29816569)
chr5 (472-505)||(34273167-34273200)
chr5 (472-505)||(38685121-38685154)
[»] chr7 (18 HSPs)
chr7 (469-510)||(24598277-24598318)
chr7 (469-505)||(29650535-29650571)
chr7 (469-505)||(43281825-43281861)
chr7 (472-509)||(31682693-31682730)
chr7 (472-505)||(35559088-35559121)
chr7 (472-505)||(44855267-44855300)
chr7 (475-505)||(27648937-27648967)
chr7 (475-505)||(32631721-32631751)
chr7 (472-505)||(11594114-11594147)
chr7 (472-505)||(12841370-12841403)
chr7 (472-505)||(21078071-21078104)
chr7 (472-505)||(33349901-33349934)
chr7 (472-505)||(34869574-34869607)
chr7 (472-505)||(38900111-38900144)
chr7 (472-505)||(39906467-39906500)
chr7 (472-505)||(40980023-40980056)
chr7 (472-505)||(45836577-45836610)
chr7 (472-505)||(49029430-49029463)
[»] scaffold0041 (1 HSPs)
scaffold0041 (469-505)||(16729-16765)
[»] chr8 (14 HSPs)
chr8 (469-505)||(42469822-42469858)
chr8 (469-505)||(42854099-42854135)
chr8 (472-510)||(39947011-39947049)
chr8 (469-505)||(14742174-14742210)
chr8 (472-503)||(26905003-26905034)
chr8 (472-505)||(2027684-2027717)
chr8 (472-505)||(11523818-11523851)
chr8 (472-505)||(12491233-12491266)
chr8 (472-505)||(25473498-25473531)
chr8 (472-505)||(36545303-36545336)
chr8 (472-505)||(36565336-36565369)
chr8 (472-505)||(37077905-37077938)
chr8 (469-505)||(8932854-8932890)
chr8 (475-503)||(12025934-12025962)
[»] chr6 (8 HSPs)
chr6 (469-505)||(5631973-5632009)
chr6 (472-505)||(21351932-21351965)
chr6 (472-505)||(32756075-32756108)
chr6 (469-505)||(608312-608348)
chr6 (472-505)||(10098989-10099022)
chr6 (472-505)||(28085530-28085563)
chr6 (469-505)||(5258243-5258279)
chr6 (472-504)||(35043537-35043569)
[»] chr4 (20 HSPs)
chr4 (469-505)||(21528439-21528475)
chr4 (469-505)||(32479189-32479225)
chr4 (472-505)||(1777112-1777145)
chr4 (469-505)||(27450274-27450310)
chr4 (472-510)||(33190938-33190976)
chr4 (472-505)||(4441007-4441040)
chr4 (472-505)||(6957752-6957785)
chr4 (472-505)||(8286593-8286626)
chr4 (472-505)||(12494817-12494850)
chr4 (472-505)||(16003080-16003113)
chr4 (472-505)||(21237012-21237045)
chr4 (472-505)||(23906392-23906425)
chr4 (472-505)||(39708587-39708620)
chr4 (472-505)||(48174188-48174221)
chr4 (472-505)||(48622638-48622671)
chr4 (472-505)||(50679658-50679691)
chr4 (472-505)||(53707948-53707981)
chr4 (469-509)||(27983344-27983384)
chr4 (473-505)||(50862799-50862831)
chr4 (473-505)||(52569610-52569642)
[»] chr3 (10 HSPs)
chr3 (472-508)||(25191531-25191567)
chr3 (469-505)||(35033297-35033333)
chr3 (469-505)||(53262292-53262328)
chr3 (472-505)||(22226-22259)
chr3 (472-509)||(43694862-43694899)
chr3 (472-505)||(48508389-48508422)
chr3 (472-505)||(51447812-51447845)
chr3 (472-505)||(52138954-52138987)
chr3 (472-505)||(54279174-54279207)
chr3 (472-508)||(47233688-47233724)
[»] chr2 (14 HSPs)
chr2 (469-505)||(38430035-38430071)
chr2 (469-505)||(39029732-39029768)
chr2 (475-505)||(23997759-23997789)
chr2 (472-505)||(2610742-2610775)
chr2 (472-505)||(3243748-3243781)
chr2 (472-505)||(3866226-3866259)
chr2 (472-505)||(7326255-7326288)
chr2 (472-505)||(12734854-12734887)
chr2 (472-505)||(24583727-24583760)
chr2 (472-505)||(28508832-28508865)
chr2 (472-505)||(31959675-31959708)
chr2 (472-505)||(35643102-35643135)
chr2 (472-505)||(38452781-38452814)
chr2 (473-505)||(25834833-25834865)
[»] chr1 (16 HSPs)
chr1 (469-505)||(696420-696456)
chr1 (469-505)||(4415500-4415536)
chr1 (472-505)||(37311850-37311883)
chr1 (472-509)||(52921234-52921271)
chr1 (469-505)||(4001550-4001586)
chr1 (469-503)||(8391923-8391957)
chr1 (475-505)||(32082852-32082882)
chr1 (472-505)||(1210899-1210932)
chr1 (472-505)||(8672072-8672105)
chr1 (472-505)||(9592888-9592921)
chr1 (472-505)||(22090250-22090283)
chr1 (472-505)||(25979326-25979359)
chr1 (472-505)||(30202225-30202258)
chr1 (472-505)||(32231049-32231082)
chr1 (472-505)||(39318283-39318316)
chr1 (472-505)||(49347488-49347521)
[»] scaffold1318 (1 HSPs)
scaffold1318 (472-505)||(485-518)
[»] scaffold0570 (1 HSPs)
scaffold0570 (472-505)||(1043-1076)
[»] scaffold0157 (1 HSPs)
scaffold0157 (472-505)||(25627-25660)
[»] scaffold0036 (1 HSPs)
scaffold0036 (472-505)||(4376-4409)
[»] scaffold0024 (1 HSPs)
scaffold0024 (472-505)||(82872-82905)
[»] scaffold0018 (1 HSPs)
scaffold0018 (472-505)||(31622-31655)


Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 15 - 447
Target Start/End: Original strand, 2392589 - 2393025
Alignment:
Q  15 agcacagaacggtgataccttatcatcaaaatagtcggtgcactagtttat----gtcaagaaacatgaatgagattcccctaaagaaaaacatgaatga 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||    
T  2392589 agcacagaacggtgataccttatcatcaaaatagtcggtgcactagtttatatatgtcaagaaacatgaatgagattcccctaaagaaaaacatgaatga 2392688  T
Q  111 gattgtcaacaacaaaagaaaacgtgaattatatcagagctgggaaataaaaaatgtataagagaaattataaaaatcatttcatcaatgtaattgcatg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2392689 gattgtcaacaacaaaagaaaacgtgaattatatcagagctgggaaataaaaaatgtataagagaaattataaaaatcatttcatcaatgtaattgcatg 2392788  T
Q  211 caactagaactattaaatctttaaacgaaaacttatcttcagagttcagatagtccgacagcgccggccattttagacaaaattatgtaatattatttta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2392789 caactagaactattaaatctttaaacgaaaacttatcttcagagttcagatagtccgacagcgccggccattttagacaaaattatgtaatattatttta 2392888  T
Q  311 tctagaataatatatcttaagaaaagacaaaaaataatataccaaatggttaaaataattaaggtgtgactttctacttggctaattttgttacttccaa 410  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2392889 tctagaataatatatcttaataaaagacaaaaaataatataccaaatggttaaaataattaaggtgtgactttctacttggctaattttgttacttccaa 2392988  T
Q  411 ttatgatattgtttggatgggagaaactcctaattgt 447  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2392989 ttatgatattgtttggattggagaaactcctaattgt 2393025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 505
Target Start/End: Complemental strand, 13561517 - 13561481
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||||||||    
T  13561517 ttcgagaaaccattagaaaagatttagaggtcaatga 13561481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 14911323 - 14911359
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    ||||||||||||||||||||||||||||||| |||||    
T  14911323 ttcgagaaaccattagaaaagatttagaggttaatga 14911359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 505
Target Start/End: Complemental strand, 16347505 - 16347473
Alignment:
Q  473 agaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||||    
T  16347505 agaaaccattagaaaagatttagaggtcaatga 16347473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 510
Target Start/End: Original strand, 36215642 - 36215680
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatgaattga 510  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  36215642 gagaaaccattaaaaaagatttagaggtcaattaattga 36215680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 1287707 - 1287674
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  1287707 gagaaaccattagaaaggatttagaggtcaatga 1287674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 508
Target Start/End: Original strand, 2393038 - 2393067
Alignment:
Q  479 cattagaaaagatttagaggtcaatgaatt 508  Q
    ||||||||||||||||||||||||||||||    
T  2393038 cattagaaaagatttagaggtcaatgaatt 2393067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 2915623 - 2915590
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  2915623 gagaaaccattagaaaggatttagaggtcaatga 2915590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 3301998 - 3302031
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||| |||||||||||||||||||||    
T  3301998 gagaaaccattataaaagatttagaggtcaatga 3302031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 4496538 - 4496571
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  4496538 gagaaaccattagaaaggatttagaggtcaatga 4496571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 10639456 - 10639489
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  10639456 gagaaaccattagaaaggatttagaggtcaatga 10639489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 12492512 - 12492479
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  12492512 gagaaaccattagaaaggatttagaggtcaatga 12492479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 16914011 - 16913978
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  16914011 gagaaaccattagaaaggatttagaggtcaatga 16913978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 29816536 - 29816569
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  29816536 gagaaaccattagaaaggatttagaggtcaatga 29816569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 34273167 - 34273200
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  34273167 gagaaaccattagaaaggatttagaggtcaatga 34273200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 38685121 - 38685154
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  38685121 gagaaaccattagaaaggatttagaggtcaatga 38685154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 469 - 510
Target Start/End: Complemental strand, 24598318 - 24598277
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatgaattga 510  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  24598318 ttcgagaaaccattagaaaagatttagaggtcaatgagttga 24598277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 29650535 - 29650571
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||||||||    
T  29650535 ttcgagaaaccattagaaaagatttagaggtcaatga 29650571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 43281825 - 43281861
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||||||||    
T  43281825 ttcgagaaaccattagaaaagatttagaggtcaatga 43281861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 509
Target Start/End: Complemental strand, 31682730 - 31682693
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatgaattg 509  Q
    |||||||||||||||| |||||||||||||||||||||    
T  31682730 gagaaaccattagaaaggatttagaggtcaatgaattg 31682693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 35559121 - 35559088
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    ||||||||||||||||||||||||||||||||||    
T  35559121 gagaaaccattagaaaagatttagaggtcaatga 35559088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 44855300 - 44855267
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    ||||||||||||||||||||||||||||||||||    
T  44855300 gagaaaccattagaaaagatttagaggtcaatga 44855267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 505
Target Start/End: Original strand, 27648937 - 27648967
Alignment:
Q  475 aaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||    
T  27648937 aaaccattagaaaagatttagaggtcaatga 27648967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 505
Target Start/End: Original strand, 32631721 - 32631751
Alignment:
Q  475 aaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||    
T  32631721 aaaccattagaaaagatttagaggtcaatga 32631751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 11594114 - 11594147
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  11594114 gagaaaccattagaaaggatttagaggtcaatga 11594147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 12841403 - 12841370
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  12841403 gagaaaccattagaaaggatttagaggtcaatga 12841370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 21078071 - 21078104
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    ||||||||||||| ||||||||||||||||||||    
T  21078071 gagaaaccattagtaaagatttagaggtcaatga 21078104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 33349934 - 33349901
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  33349934 gagaaaccattagaaatgatttagaggtcaatga 33349901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 34869574 - 34869607
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  34869574 gagaaaccattagaaaggatttagaggtcaatga 34869607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 38900111 - 38900144
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  38900111 gagaaaccattagaaaggatttagaggtcaatga 38900144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 39906500 - 39906467
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  39906500 gagaaaccattagaaaggatttagaggtcaatga 39906467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 40980056 - 40980023
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    ||||||| ||||||||||||||||||||||||||    
T  40980056 gagaaactattagaaaagatttagaggtcaatga 40980023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 45836610 - 45836577
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  45836610 gagaaaccattagaaaggatttagaggtcaatga 45836577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 49029430 - 49029463
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  49029430 gagaaaccattagaaaggatttagaggtcaatga 49029463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 16729 - 16765
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||||||||    
T  16729 ttcgagaaaccattagaaaagatttagaggtcaatga 16765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 505
Target Start/End: Complemental strand, 42469858 - 42469822
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||||||||    
T  42469858 ttcgagaaaccattagaaaagatttagaggtcaatga 42469822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 505
Target Start/End: Complemental strand, 42854135 - 42854099
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||||||||    
T  42854135 ttcgagaaaccattagaaaagatttagaggtcaatga 42854099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 510
Target Start/End: Original strand, 39947011 - 39947049
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatgaattga 510  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  39947011 gagaaaccattagaaaagatttagaggtcaatgagttga 39947049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 505
Target Start/End: Complemental strand, 14742210 - 14742174
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||| ||||||||    
T  14742210 ttcgagaaaccattagaaaagatttagaagtcaatga 14742174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 503
Target Start/End: Complemental strand, 26905034 - 26905003
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaat 503  Q
    ||||||||||||||||||||||||||||||||    
T  26905034 gagaaaccattagaaaagatttagaggtcaat 26905003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 2027684 - 2027717
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  2027684 gagaaaccattagaaatgatttagaggtcaatga 2027717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 11523851 - 11523818
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  11523851 gagaaaccattagaaaggatttagaggtcaatga 11523818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 12491266 - 12491233
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  12491266 gagaaaccattagaaaggatttagaggtcaatga 12491233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 25473531 - 25473498
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  25473531 gagaaaccattagaaaggatttagaggtcaatga 25473498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 36545303 - 36545336
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  36545303 gagaaaccattagaaaggatttagaggtcaatga 36545336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 36565369 - 36565336
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  36565369 gagaaaccattagaaaggatttagaggtcaatga 36565336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 37077905 - 37077938
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  37077905 gagaaaccattagaaaggatttagaggtcaatga 37077938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 8932854 - 8932890
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||| |||| |||||    
T  8932854 ttcgagaaaccattagaaaagatttaaaggttaatga 8932890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 475 - 503
Target Start/End: Original strand, 12025934 - 12025962
Alignment:
Q  475 aaaccattagaaaagatttagaggtcaat 503  Q
    |||||||||||||||||||||||||||||    
T  12025934 aaaccattagaaaagatttagaggtcaat 12025962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 5631973 - 5632009
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||||||||    
T  5631973 ttcgagaaaccattagaaaagatttagaggtcaatga 5632009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 21351965 - 21351932
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    ||||||||||||||||||||||||||||||||||    
T  21351965 gagaaaccattagaaaagatttagaggtcaatga 21351932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 32756075 - 32756108
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    ||||||||||||||||||||||||||||||||||    
T  32756075 gagaaaccattagaaaagatttagaggtcaatga 32756108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 608312 - 608348
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    ||||||||||||||||||||||||||||| |||||||    
T  608312 ttcgagaaaccattagaaaagatttagagttcaatga 608348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 10099022 - 10098989
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||| |||||||||||||||||||||    
T  10099022 gagaaaccattaaaaaagatttagaggtcaatga 10098989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 28085530 - 28085563
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  28085530 gagaaaccattagaaaggatttagaggtcaatga 28085563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 505
Target Start/End: Complemental strand, 5258279 - 5258243
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  5258279 ttcgagaaatcattagacaagatttagaggtcaatga 5258243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 472 - 504
Target Start/End: Complemental strand, 35043569 - 35043537
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatg 504  Q
    |||||||||||||||| ||||||||||||||||    
T  35043569 gagaaaccattagaaaggatttagaggtcaatg 35043537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 21528439 - 21528475
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||||||||    
T  21528439 ttcgagaaaccattagaaaagatttagaggtcaatga 21528475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 32479189 - 32479225
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||||||||    
T  32479189 ttcgagaaaccattagaaaagatttagaggtcaatga 32479225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 1777145 - 1777112
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    ||||||||||||||||||||||||||||||||||    
T  1777145 gagaaaccattagaaaagatttagaggtcaatga 1777112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 505
Target Start/End: Complemental strand, 27450310 - 27450274
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||| ||||||||||||||||||||||    
T  27450310 ttcgagaaaccattggaaaagatttagaggtcaatga 27450274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 510
Target Start/End: Complemental strand, 33190976 - 33190938
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatgaattga 510  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  33190976 gagaaaccattagaaaggatttagaggtcaatgagttga 33190938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 4441007 - 4441040
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  4441007 gagaaaccattagaaaggatttagaggtcaatga 4441040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 6957752 - 6957785
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  6957752 gagaaaccattagaaaggatttagaggtcaatga 6957785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 8286593 - 8286626
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  8286593 gagaaaccattagaaaggatttagaggtcaatga 8286626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 12494817 - 12494850
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  12494817 gagaaaccattagaaaggatttagaggtcaatga 12494850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 16003080 - 16003113
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    ||||||||||||||||| ||||||||||||||||    
T  16003080 gagaaaccattagaaaaaatttagaggtcaatga 16003113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 21237012 - 21237045
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  21237012 gagaaaccattagaaaggatttagaggtcaatga 21237045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 23906425 - 23906392
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  23906425 gagaaaccattagaaaggatttagaggtcaatga 23906392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 39708587 - 39708620
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  39708587 gagaaaccattagaaaggatttagaggtcaatga 39708620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 48174221 - 48174188
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  48174221 gagaaaccattagaaaggatttagaggtcaatga 48174188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 48622671 - 48622638
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||| |||||||||||||||||||||||||||    
T  48622671 gagaaatcattagaaaagatttagaggtcaatga 48622638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 50679658 - 50679691
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  50679658 gagaaaccattagaaaggatttagaggtcaatga 50679691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 53707948 - 53707981
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  53707948 gagaaaccattagaaaggatttagaggtcaatga 53707981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 509
Target Start/End: Original strand, 27983344 - 27983384
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatgaattg 509  Q
    ||||| ||||| ||||||||||||||||| |||||||||||    
T  27983344 ttcgataaacctttagaaaagatttagagttcaatgaattg 27983384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 505
Target Start/End: Original strand, 50862799 - 50862831
Alignment:
Q  473 agaaaccattagaaaagatttagaggtcaatga 505  Q
    ||||||||||||||| |||||||||||||||||    
T  50862799 agaaaccattagaaaggatttagaggtcaatga 50862831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 505
Target Start/End: Complemental strand, 52569642 - 52569610
Alignment:
Q  473 agaaaccattagaaaagatttagaggtcaatga 505  Q
    ||||||||||||||| |||||||||||||||||    
T  52569642 agaaaccattagaaaggatttagaggtcaatga 52569610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 508
Target Start/End: Original strand, 25191531 - 25191567
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatgaatt 508  Q
    |||||||||||||||||||||||||||||||||||||    
T  25191531 gagaaaccattagaaaagatttagaggtcaatgaatt 25191567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 35033297 - 35033333
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||||||||    
T  35033297 ttcgagaaaccattagaaaagatttagaggtcaatga 35033333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 53262292 - 53262328
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||| ||||||||||||||||||    
T  53262292 ttcgagaaaccattagaagagatttagaggtcaatga 53262328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 22226 - 22259
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  22226 gagaaaccattagaaaggatttagaggtcaatga 22259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 509
Target Start/End: Complemental strand, 43694899 - 43694862
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatgaattg 509  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  43694899 gagaaaccattaaaaaagatttagaggtcaatggattg 43694862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 48508389 - 48508422
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  48508389 gagaaaccattagaaaggatttagaggtcaatga 48508422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 51447845 - 51447812
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  51447845 gagaaaccattagaaaggatttagaggtcaatga 51447812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 52138954 - 52138987
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  52138954 gagaaaccattagaaaggatttagaggtcaatga 52138987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 54279174 - 54279207
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  54279174 gagaaaccattagaaaggatttagaggtcaatga 54279207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 472 - 508
Target Start/End: Complemental strand, 47233724 - 47233688
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatgaatt 508  Q
    |||||||||||||||| || |||||||||||||||||    
T  47233724 gagaaaccattagaaaggaattagaggtcaatgaatt 47233688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 38430035 - 38430071
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||||||||    
T  38430035 ttcgagaaaccattagaaaagatttagaggtcaatga 38430071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 39029732 - 39029768
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||||||||    
T  39029732 ttcgagaaaccattagaaaagatttagaggtcaatga 39029768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 505
Target Start/End: Original strand, 23997759 - 23997789
Alignment:
Q  475 aaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||    
T  23997759 aaaccattagaaaagatttagaggtcaatga 23997789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 2610742 - 2610775
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  2610742 gagaaaccattagaaaggatttagaggtcaatga 2610775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 3243781 - 3243748
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  3243781 gagaaaccattagaaaggatttagaggtcaatga 3243748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 3866226 - 3866259
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  3866226 gagaaaccattagaaaggatttagaggtcaatga 3866259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 7326288 - 7326255
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  7326288 gagaaaccattagaaatgatttagaggtcaatga 7326255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 12734854 - 12734887
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  12734854 gagaaaccattagaaaggatttagaggtcaatga 12734887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 24583760 - 24583727
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  24583760 gagaaaccattagaaaggatttagaggtcaatga 24583727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 28508832 - 28508865
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  28508832 gagaaaccattagaaaggatttagaggtcaatga 28508865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 31959675 - 31959708
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  31959675 gagaaaccattagaaaggatttagaggtcaatga 31959708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 35643102 - 35643135
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  35643102 gagaaaccattagaaaggatttagaggtcaatga 35643135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 38452814 - 38452781
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  38452814 gagaaaccattagaaaggatttagaggtcaatga 38452781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 505
Target Start/End: Original strand, 25834833 - 25834865
Alignment:
Q  473 agaaaccattagaaaagatttagaggtcaatga 505  Q
    ||||||||||||||| |||||||||||||||||    
T  25834833 agaaaccattagaaaggatttagaggtcaatga 25834865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 696420 - 696456
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||||||||    
T  696420 ttcgagaaaccattagaaaagatttagaggtcaatga 696456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 4415500 - 4415536
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||||||||    
T  4415500 ttcgagaaaccattagaaaagatttagaggtcaatga 4415536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 37311883 - 37311850
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    ||||||||||||||||||||||||||||||||||    
T  37311883 gagaaaccattagaaaagatttagaggtcaatga 37311850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 509
Target Start/End: Original strand, 52921234 - 52921271
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatgaattg 509  Q
    |||||||||||||||| |||||||||||||||||||||    
T  52921234 gagaaaccattagaaaggatttagaggtcaatgaattg 52921271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 505
Target Start/End: Complemental strand, 4001586 - 4001550
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaatga 505  Q
    ||||||||||||||| |||||||||||||||||||||    
T  4001586 ttcgagaaaccattaaaaaagatttagaggtcaatga 4001550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 503
Target Start/End: Original strand, 8391923 - 8391957
Alignment:
Q  469 ttcgagaaaccattagaaaagatttagaggtcaat 503  Q
    ||||||||| |||||||||||||||||||||||||    
T  8391923 ttcgagaaatcattagaaaagatttagaggtcaat 8391957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 505
Target Start/End: Complemental strand, 32082882 - 32082852
Alignment:
Q  475 aaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||||||||||||||||||    
T  32082882 aaaccattagaaaagatttagaggtcaatga 32082852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 1210899 - 1210932
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  1210899 gagaaaccattagaaaggatttagaggtcaatga 1210932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 8672072 - 8672105
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  8672072 gagaaaccattagaaaggatttagaggtcaatga 8672105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 9592888 - 9592921
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  9592888 gagaaaccattagaaatgatttagaggtcaatga 9592921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 22090250 - 22090283
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  22090250 gagaaaccattagaaaggatttagaggtcaatga 22090283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 25979359 - 25979326
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  25979359 gagaaaccattagaaaggatttagaggtcaatga 25979326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 30202258 - 30202225
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  30202258 gagaaaccattagaaaggatttagaggtcaatga 30202225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 32231082 - 32231049
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  32231082 gagaaaccattagaaaggatttagaggtcaatga 32231049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 39318283 - 39318316
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  39318283 gagaaaccattagaaaggatttagaggtcaatga 39318316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 49347521 - 49347488
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  49347521 gagaaaccattagaaaggatttagaggtcaatga 49347488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 485 - 518
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  485 gagaaaccattagaaaggatttagaggtcaatga 518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 1076 - 1043
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||| |||||||||||||||||||||    
T  1076 gagaaaccattaaaaaagatttagaggtcaatga 1043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 25660 - 25627
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  25660 gagaaaccattagaaaggatttagaggtcaatga 25627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 4409 - 4376
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  4409 gagaaaccattagaaaggatttagaggtcaatga 4376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 82872 - 82905
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  82872 gagaaaccattagaaaggatttagaggtcaatga 82905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 31622 - 31655
Alignment:
Q  472 gagaaaccattagaaaagatttagaggtcaatga 505  Q
    |||||||||||||||| |||||||||||||||||    
T  31622 gagaaaccattagaaaggatttagaggtcaatga 31655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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