View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16728_low_3 (Length: 395)

Name: NF16728_low_3
Description: NF16728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16728_low_3
NF16728_low_3
[»] chr4 (11 HSPs)
chr4 (19-311)||(12368292-12368585)
chr4 (19-238)||(53772930-53773152)
chr4 (226-311)||(53773165-53773250)
chr4 (329-384)||(12368244-12368299)
chr4 (329-384)||(53773243-53773298)
chr4 (329-382)||(53773048-53773101)
chr4 (329-380)||(12368418-12368469)
chr4 (134-192)||(12368241-12368299)
chr4 (134-192)||(53773243-53773301)
chr4 (225-257)||(12368278-12368310)
chr4 (225-257)||(53773232-53773264)
[»] chr1 (5 HSPs)
chr1 (19-311)||(26118795-26119087)
chr1 (329-384)||(26119080-26119135)
chr1 (134-192)||(26119080-26119138)
chr1 (329-380)||(26118911-26118962)
chr1 (225-257)||(26119069-26119101)
[»] chr2 (3 HSPs)
chr2 (329-386)||(33512197-33512254)
chr2 (134-189)||(33512197-33512252)
chr2 (225-257)||(33512186-33512218)
[»] chr8 (3 HSPs)
chr8 (329-384)||(3164778-3164833)
chr8 (134-192)||(3164778-3164836)
chr8 (225-257)||(3164767-3164799)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 12368585 - 12368292
Alignment:
Q  19 attaccgtcccaattctctatttctttctctgccatttttatgcc-taaatatgtgcaattgacatatttatgattacaccatctttcgttttcagtatc 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  12368585 attaccgtcccaattctctattgctttctctgccatttttatgccctgaatatgtgcaattgacatgtttatgattacgccatctttcgttttcagtatc 12368486  T
Q  118 agaaaacaacagcaaccatgattcactatctattgtttctaatttattcataaactcgattgccacacctttaatgtattcataaactcaatagaagaaa 217  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| |||| |||||||||||||||||||    
T  12368485 agaaatcaacaacaaccatgattcactatctattgtttctaatttattcataaactcaattcccacacttttaatttattgataaactcaatagaagaaa 12368386  T
Q  218 ttaacaacaaccatgattcatgattcactatctaatatttgttacgattgatactgtgtaaataaactgaaataccaaccatgattcatgattc 311  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  12368385 ttaacaacaaccatgattcatgatccactatctgatatttgttacgattgatactatgtaaataaaccgaaataccaaccatgattcatgattc 12368292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 53772930 - 53773152
Alignment:
Q  19 attaccgtcccaattctctatttctttctctgccatttttatgcc---taaatatgtgcaattgacatatttatgattacaccatctttcgttttcagta 115  Q
    |||| ||||||||||||||||| |||||||||||||| |||||||   | |||||||||||||||||| ||||||||||| || |||||||||||||| |    
T  53772930 attatcgtcccaattctctattgctttctctgccattcttatgccatatgaatatgtgcaattgacatgtttatgattacgccctctttcgttttcagga 53773029  T
Q  116 tcagaaaacaacagcaaccatgattcactatctattgtttctaatttattcataaactcgattgccacacctttaatgtattcataaactcaatagaaga 215  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||||| |||||||||||||    
T  53773030 tcagaaatcaacaacaaccatgattcactatctattgtttctaatttattcataaactcaattcccacacctataatttattcatatactcaatagaaga 53773129  T
Q  216 aattaacaacaaccatgattcat 238  Q
    |||||||||||||||||||||||    
T  53773130 aattaacaacaaccatgattcat 53773152  T

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Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 226 - 311
Target Start/End: Original strand, 53773165 - 53773250
Alignment:
Q  226 aaccatgattcatgattcactatctaatatttgttacgattgatactgtgtaaataaactgaaataccaaccatgattcatgattc 311  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53773165 aaccacgattcatgattcactacctaatatttgttacgattgatactgtgtaaataaactgaaataccaaccatgattcatgattc 53773250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 329 - 384
Target Start/End: Complemental strand, 12368299 - 12368244
Alignment:
Q  329 catgattcactatctaatatttctaatttattcataaactcaattcccacaccttt 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12368299 catgattcactatctaatatttctaatttattcataaactcaattcccacaccttt 12368244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 53773243 - 53773298
Alignment:
Q  329 catgattcactatctaatatttctaatttattcataaactcaattcccacaccttt 384  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  53773243 catgattcactacctaatatttttaatttattcataaactcaattcccacaccttt 53773298  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 53773048 - 53773101
Alignment:
Q  329 catgattcactatctaatatttctaatttattcataaactcaattcccacacct 382  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  53773048 catgattcactatctattgtttctaatttattcataaactcaattcccacacct 53773101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 12368469 - 12368418
Alignment:
Q  329 catgattcactatctaatatttctaatttattcataaactcaattcccacac 380  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  12368469 catgattcactatctattgtttctaatttattcataaactcaattcccacac 12368418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 12368299 - 12368241
Alignment:
Q  134 catgattcactatctattgtttctaatttattcataaactcgattgccacacctttaat 192  Q
    |||||||||||||||| | |||||||||||||||||||||| ||| |||||||||||||    
T  12368299 catgattcactatctaatatttctaatttattcataaactcaattcccacacctttaat 12368241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 53773243 - 53773301
Alignment:
Q  134 catgattcactatctattgtttctaatttattcataaactcgattgccacacctttaat 192  Q
    |||||||||||| ||| | ||| |||||||||||||||||| ||| |||||||||||||    
T  53773243 catgattcactacctaatatttttaatttattcataaactcaattcccacacctttaat 53773301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 12368310 - 12368278
Alignment:
Q  225 caaccatgattcatgattcactatctaatattt 257  Q
    |||||||||||||||||||||||||||||||||    
T  12368310 caaccatgattcatgattcactatctaatattt 12368278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 53773232 - 53773264
Alignment:
Q  225 caaccatgattcatgattcactatctaatattt 257  Q
    ||||||||||||||||||||||| |||||||||    
T  53773232 caaccatgattcatgattcactacctaatattt 53773264  T

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Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 26118795 - 26119087
Alignment:
Q  19 attaccgtcccaattctctatttctttctctgccatttttatgcc-taaatatgtgcaattgacatatttatgattacaccatctttcgttttcagtatc 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| | ||||||||| |||||||||| ||| ||||||    
T  26118795 attaccgtcccaattctctattgctttctctgccatttttatgccctgaatatgtgcaattgacatgtctatgattacgccatctttcgattttagtatc 26118894  T
Q  118 agaaaacaacagcaaccatgattcactatctattgtttctaatttattcataaactcgattgccacacctttaatgtattcataaactcaatagaagaaa 217  Q
    | ||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||| |||||| |||||| |||| ||||||||||| |||||||    
T  26118895 aaaaatcaacaacaaccatgattcactatctattgtttctaattaattcataaactcaattcccacacttttaatttattgataaactcaatggaagaaa 26118994  T
Q  218 ttaacaacaaccatgattcatgattcactatctaatatttgttacgattgatactgtgtaaataaactgaaataccaaccatgattcatgattc 311  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26118995 ttaacaacaatcatgattcatgatccactatctaatatttgttac-attgatactgtgtaaataaactgaaataccaaccatggttcatgattc 26119087  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 26119080 - 26119135
Alignment:
Q  329 catgattcactatctaatatttctaatttattcataaactcaattcccacaccttt 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26119080 catgattcactatctaatatttctaatttattcataaactcaattcccacaccttt 26119135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 26119080 - 26119138
Alignment:
Q  134 catgattcactatctattgtttctaatttattcataaactcgattgccacacctttaat 192  Q
    |||||||||||||||| | |||||||||||||||||||||| ||| |||||||||||||    
T  26119080 catgattcactatctaatatttctaatttattcataaactcaattcccacacctttaat 26119138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 26118911 - 26118962
Alignment:
Q  329 catgattcactatctaatatttctaatttattcataaactcaattcccacac 380  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||||||    
T  26118911 catgattcactatctattgtttctaattaattcataaactcaattcccacac 26118962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 26119069 - 26119101
Alignment:
Q  225 caaccatgattcatgattcactatctaatattt 257  Q
    |||||||| ||||||||||||||||||||||||    
T  26119069 caaccatggttcatgattcactatctaatattt 26119101  T

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Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 33512197 - 33512254
Alignment:
Q  329 catgattcactatctaatatttctaatttattcataaactcaattcccacacctttgc 386  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33512197 catgattcactatctaatatttctaattcattcataaactcaattcccacacctttgc 33512254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 33512197 - 33512252
Alignment:
Q  134 catgattcactatctattgtttctaatttattcataaactcgattgccacaccttt 189  Q
    |||||||||||||||| | ||||||||| |||||||||||| ||| ||||||||||    
T  33512197 catgattcactatctaatatttctaattcattcataaactcaattcccacaccttt 33512252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 33512186 - 33512218
Alignment:
Q  225 caaccatgattcatgattcactatctaatattt 257  Q
    |||||||||||||||||||||||||||||||||    
T  33512186 caaccatgattcatgattcactatctaatattt 33512218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 3164778 - 3164833
Alignment:
Q  329 catgattcactatctaatatttctaatttattcataaactcaattcccacaccttt 384  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  3164778 catgattcactacctaatatttttaatttattcataaactcaattcccacaccttt 3164833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 3164778 - 3164836
Alignment:
Q  134 catgattcactatctattgtttctaatttattcataaactcgattgccacacctttaat 192  Q
    |||||||||||| ||| | ||| |||||||||||||||||| ||| |||||||||||||    
T  3164778 catgattcactacctaatatttttaatttattcataaactcaattcccacacctttaat 3164836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 3164767 - 3164799
Alignment:
Q  225 caaccatgattcatgattcactatctaatattt 257  Q
    ||||||||||||||||||||||| |||||||||    
T  3164767 caaccatgattcatgattcactacctaatattt 3164799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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