View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16728_low_4 (Length: 372)
Name: NF16728_low_4
Description: NF16728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16728_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 351
Target Start/End: Original strand, 38028691 - 38029033
Alignment:
| Q |
9 |
agcacagaaactcacaagttgtctactttcatgacccaatatgttttgcatatgaacaaacagagatttccactgatgcataaggctcgattctaaatcg |
108 |
Q |
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| T |
38028691 |
agcacagaaactcacaagttgtctactttcatgacccaatatgttttgcatatgaacaaacagagatttccactgatgcataaggctcgattctaaatcg |
38028790 |
T |
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| Q |
109 |
gatggatcaatgccgccttgttgttcatgtatgatattatgagtatcatttattccagaaaatttctggaccaccaatcttgcttccttctgactcttcc |
208 |
Q |
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| T |
38028791 |
gatggatcaatgccgccttgttgttcatgtatgatattatgagtatcatttattccagaaaatttctggaccaccaatcttgcttccttctgactcttcc |
38028890 |
T |
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| Q |
209 |
ttagagctagcaaaaagttttaagataaaatcgttnnnnnnntcaaattgatagtagtaaaatactccagtatgataattgaatatacagtgaagaccca |
308 |
Q |
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| T |
38028891 |
ttagagctagcaaaatgttttaagataaaatcgttaaaaaaatcaaattgatagtagtaaaatactccagtatgataattgaatatacagtgaagaccca |
38028990 |
T |
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| Q |
309 |
atttggtctcacaattttttctcaagccaattaattagtcacc |
351 |
Q |
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| T |
38028991 |
atttggtctcacaattttttctcaagccaattaattagtcacc |
38029033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 326
Target Start/End: Complemental strand, 21207035 - 21207006
Alignment:
| Q |
297 |
agtgaagacccaatttggtctcacaatttt |
326 |
Q |
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| T |
21207035 |
agtgaagacccaatttggtctcacaatttt |
21207006 |
T |
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