View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16728_low_5 (Length: 371)
Name: NF16728_low_5
Description: NF16728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16728_low_5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 212 - 371
Target Start/End: Complemental strand, 32674580 - 32674421
Alignment:
| Q |
212 |
gaggcttccatgtttcaaagagatgaatgattcttgacctaaagagtttttcagggtttcgtgctcttggatttaatgtgattgtatcagtttttatggc |
311 |
Q |
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| T |
32674580 |
gaggcttccatgtttcaaagagatgaatgattcttgacctaaagaatttttcagggtttcgtgctcttggatttaatgtgatcgtatcagtttttatggc |
32674481 |
T |
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| Q |
312 |
cattttcatcaatcttggactgagttatcccactctacctgtgagtcattcattcttctt |
371 |
Q |
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| T |
32674480 |
cattttcatcaatcttggactgagttatcccactctacctgtgagtcattcattcttctt |
32674421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 32674773 - 32674624
Alignment:
| Q |
19 |
gctagagcattgacaactcctgatacaagccatccacaaggaacaccaggaaacaagcacaacaatttgagtgttcttcaacagcactgtgcnnnnnnng |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32674773 |
gctagagcattgacaactcctgatacaagccatccacaaggaacaccaggaaacaagcacaacaatttgagtgttcttcaacagcactgtgctttttttg |
32674674 |
T |
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| Q |
119 |
atcaggatggaaatggaatcatttacccttgggaaacttacacgggtaag |
168 |
Q |
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| T |
32674673 |
atcaggatggaaatggaatcatttacccttgggaaacttacacgggtaag |
32674624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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