View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16728_low_6 (Length: 341)
Name: NF16728_low_6
Description: NF16728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16728_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 35 - 325
Target Start/End: Original strand, 2392114 - 2392403
Alignment:
| Q |
35 |
accattcaattcccatgnnnnnnnnttgaatttggtcaatagataaataaattctagccaaaatttgttttaactagaatttgaactcgaattttttcgt |
134 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2392114 |
accattcaattcccatgaaaaaaaattgaatttggtcaatagataaataaattctagccaaaatttgttttaactagaatttgaactcgaatttt-tcgt |
2392212 |
T |
|
| Q |
135 |
cttttatcgtagttcattaactaactatttaaagttaatcatgtgattaatattactagctacccatgattctcaaagaaaagagttgtgatcatccaaa |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||| |||| |
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| T |
2392213 |
cttttatcgtagttcattaactaactatttaaagttaatcatgtgattaatattgctagcgatccatgattctcaaagaaaagagttgtgatcattcaaa |
2392312 |
T |
|
| Q |
235 |
attcgatcaccatttgttatggagtccattaaacatttgagctcaatctttttattatattgttagttaaatttgagcatagctgttccaa |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2392313 |
attcgatcaccatttgttatggagtccattaaacatttgagctcaatctttttattatattgttagttaaatttgagcatagctgttccaa |
2392403 |
T |
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