View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16729_high_1 (Length: 565)
Name: NF16729_high_1
Description: NF16729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16729_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Complemental strand, 42601115 - 42600596
Alignment:
| Q |
1 |
atgtgaggctaaaacacactataagaactaaaaacatatcaaaccctatattatctattattacaacaatatgttgaagagaaaagagagnnnnnnn--c |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
42601115 |
atgtgaggctaaaacacactataagaactaaaaacatatcaaaccctatattatctattattacaactatatgttgaagagaaaagagagaaaaaaaaac |
42601016 |
T |
|
| Q |
99 |
acgaaaataagtggcttaaaccacgtgaatatgaagatgtacaagacaaacaggcaaaggaagacttggctgtaaactgttcaacctcaagaacacaagg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42601015 |
acgaaaataagtggcttaaaccacgtgaatatgaagatgtacaagacaaacaggcaaaggaagacttggctgtaaactgttcaacctcaagaacacaagg |
42600916 |
T |
|
| Q |
199 |
tggcagttaatcccaactaaattacaaaattggctcacgtgggaatcatgatctctcacgtggttatctaatttcacaattcacaactatcctatataat |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42600915 |
tggcagttaatcccaactaaattacaaaattggctc---------------------acgtggttatctaatttcacaattcacaactatcctatataat |
42600837 |
T |
|
| Q |
299 |
atcaaatgtgnnnnnnntacaatgaagagaatatgggggactctatttcacaagttgaccccaactttagatttttaatataattctcaaccgtacatgt |
398 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42600836 |
atcaaatgtgaaaaaaatacaatgaagagaat----------ctatttcacaagttgaccccaactttagatttttaatataattctcaaccgtacatgt |
42600747 |
T |
|
| Q |
399 |
ataattcgagtcacatgttgatctccacctctattcagttttgtttttcttttggaatgacaatgttaattaatatgttagtagacaagtgagaaattat |
498 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42600746 |
ataattcaagtcacatgttgatctccacctctattcagttttgtttttcttttggaatgacaatgttaattaatatgttagtggacaagtgagaaattat |
42600647 |
T |
|
| Q |
499 |
gtttggagttaaaaactacatataatttcatgttagaattaatgatggaat |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42600646 |
gtttggagttaaaaactacatataatttcatgttagaattaatgatggaat |
42600596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University