View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16729_high_12 (Length: 250)
Name: NF16729_high_12
Description: NF16729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16729_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 5525375 - 5525144
Alignment:
| Q |
1 |
tattcttcgttccatgctcaaacgacggaataacaccgtcaccaacgtcgagttcaccggatagaagagaaacggagattggttggtaagaaaatgttat |
100 |
Q |
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| T |
5525375 |
tattcttcgttccatgctcaaacgacggaataacaccgtcaccaacgtcgagttcaccggctagaagagaaactgagatgggttggtaagaaaatgttat |
5525276 |
T |
|
| Q |
101 |
tttctcgttagggtttgtggtggaaagagttaggtcaaactcagacgaagtgagtttaagggaggtgactgagaaggaaggacgttggggatggtagagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
5525275 |
tttctcgttagggtttgtggtggaaagagttaggtcaaattcagaggaggtgagtttaagggaggtgacggtgaaggaaggacgttggggatggtagagg |
5525176 |
T |
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| Q |
201 |
aagtagacgacggtgccagcgacgccgaggag |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
5525175 |
aagtagacgacggtgccagcgacgccgaggag |
5525144 |
T |
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