View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16729_high_4 (Length: 452)
Name: NF16729_high_4
Description: NF16729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16729_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 14741212 - 14740777
Alignment:
| Q |
1 |
tgccaaagaatgtaatagggttgtgttttagttttatttaagttggatgctcaaatgcttttagtctgaacatgtgggttgatctttctcaaaccttttt |
100 |
Q |
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| T |
14741212 |
tgccaaagaatgtaatagggttgtgttttggttttatttaagttggatgctcaaatgcttttagtctgaacatgtgggttgatctttctcaaaccttatt |
14741113 |
T |
|
| Q |
101 |
atagtaatctcaatggttgcataaaacatcaatttgtgcaatactgggagtatgttccattacgatttgaaaagatttttctatgttgaaaaagtcttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14741112 |
atagtaatctcaatggttgcataaaacatcaatttgtgcaatactgggagtatgttccattacgatttgaaaagatttttttatgttgaaaaagtcttgt |
14741013 |
T |
|
| Q |
201 |
cgtactcatttaaaaggtctagtgatatttcttgacttttaaaagtaattatggaaatcttgttgtattcccgaattttacaaaatcatgtttccgttga |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
14741012 |
cgtattcatttaaaaggtctagtgatatttcttgacttataaaagtaattatggaaatcttgttgtattccctaattttacaaaatcatgtttctgttga |
14740913 |
T |
|
| Q |
301 |
tgcatcaattgctgctactatttagactatattttgcattgatgattagtataaataaggttaatcccttcaagtattttcatcttgaattttatgcaac |
400 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14740912 |
tgcatcaattactgctactatttagactatatcttgcattgatgattagtataaataaggttaatcccttcaagtattttcatcttgaattttatgaaac |
14740813 |
T |
|
| Q |
401 |
tgaatgttcacttttgagatttacagagtagatttt |
436 |
Q |
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||||||||| |||||||||||||||||||||||||| |
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| T |
14740812 |
tgaatgttctcttttgagatttacagagtagatttt |
14740777 |
T |
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