View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16729_high_5 (Length: 426)
Name: NF16729_high_5
Description: NF16729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16729_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 91 - 409
Target Start/End: Original strand, 54106808 - 54107126
Alignment:
| Q |
91 |
ccttattctacgaaacaattgactttttaagtataacaatgtggaagtatacatttgttgttgtgtcgatatttcactgagtcttggcggtacttgtttt |
190 |
Q |
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| T |
54106808 |
ccttattctacgaaacaattgactttttaagtataacaatgagggagtatacatttgttgttgtgtcgatatttcactaagtcttggcggtacttgtttt |
54106907 |
T |
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| Q |
191 |
ggtgttgatatttgattggtttgttatgtttgtcaagtaggaatgacactaagcaatcatatcccattatttcggttacacttttccaccactcactttc |
290 |
Q |
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| T |
54106908 |
ggtgttgatatttgattggtttgttatgtttgtcaagtaggaatgacactaagcaatcatatcccattatttcggttacacttttccaccactcactttc |
54107007 |
T |
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| Q |
291 |
atcaatgattgttaatgcatgaataaatgagttcattggtgttgatatttgttttggtgtactccatttatcgtaaatcatgtgtcgttcaagaaaataa |
390 |
Q |
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| T |
54107008 |
atcaatgattgttaatgcatgaataaatgagttcattggtgttgatatttgttttggtgtactccatttatcgtaaatcatgtgtcgttcaagaaaataa |
54107107 |
T |
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| Q |
391 |
tgaaagtaaagctggagaa |
409 |
Q |
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| T |
54107108 |
tgaaagtaaagctggagaa |
54107126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 54106740 - 54106805
Alignment:
| Q |
1 |
agaacatctctaatggtaggtattcttttaaggaacctgttttgagtttcatagaccactaataag |
66 |
Q |
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| T |
54106740 |
agaacatctcagatggtaggtattcttttaaggaacctcttttgagtttcatagaccactgataag |
54106805 |
T |
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