View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16729_low_10 (Length: 267)

Name: NF16729_low_10
Description: NF16729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16729_low_10
NF16729_low_10
[»] chr1 (4 HSPs)
chr1 (9-245)||(30996386-30996633)
chr1 (109-187)||(8981788-8981866)
chr1 (216-245)||(47556310-47556339)
chr1 (111-187)||(30717258-30717334)
[»] chr4 (9 HSPs)
chr4 (147-187)||(46444256-46444296)
chr4 (138-187)||(39267565-39267614)
chr4 (126-187)||(48801936-48801997)
chr4 (147-187)||(1846235-1846275)
chr4 (111-190)||(41377931-41378010)
chr4 (153-190)||(20668048-20668085)
chr4 (161-190)||(32296178-32296207)
chr4 (118-187)||(33653078-33653147)
chr4 (147-187)||(12619488-12619528)
[»] scaffold0193 (1 HSPs)
scaffold0193 (105-187)||(19994-20076)
[»] chr8 (1 HSPs)
chr8 (109-190)||(41068310-41068390)
[»] chr2 (6 HSPs)
chr2 (110-187)||(25985106-25985182)
chr2 (117-187)||(14395146-14395216)
chr2 (135-188)||(30353947-30354000)
chr2 (146-187)||(32904852-32904893)
chr2 (161-190)||(35319338-35319367)
chr2 (151-183)||(11146994-11147026)
[»] scaffold0008 (1 HSPs)
scaffold0008 (117-181)||(240662-240726)
[»] chr5 (2 HSPs)
chr5 (135-190)||(6519478-6519533)
chr5 (147-187)||(36593847-36593887)
[»] chr7 (2 HSPs)
chr7 (147-187)||(44565172-44565212)
chr7 (147-187)||(45843608-45843648)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 245
Target Start/End: Complemental strand, 30996633 - 30996386
Alignment:
Q  9 gattattctggggatataaagcggaaaacaagcaccaagactagtgcataattacaaactaattaattataaggtcatgnnnnnnnn-----aagagaat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | ||||||||||              ||||||||    
T  30996633 gattattctggggatataaagcggaaaacaagcaccaagactagtgcataattaaaaattaattagt-ataaggtcatttttttttttttttaagagaat 30996535  T
Q  104 tataaggtcatgataacttgtgcttttatgatacatgttatgaatttcataaatgaaaaatatttattacaaaacattaattt-------ttaagagcat 196  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||       |||||||||     
T  30996534 tataaggtcatgataacttgtgcttttatgatacatattatggatttcataaatgaaaaatatttattacaaaacattaatttttaatttttaagagcac 30996435  T
Q  197 aatttagcattttccttacttataaaccattttcatagaacacaaccat 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30996434 aatttagcattttccttacttataaaccattttcatagaacacaaccat 30996386  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 8981866 - 8981788
Alignment:
Q  109 ggtcatgataacttgtgcttttatgatacatgttatgaatttcataaatgaaaaatatttattacaaaacattaatttt 187  Q
    ||||||||||||||||||| ||| |  ||||||||   ||||||||||||  ||||||| |||||||||||||||||||    
T  8981866 ggtcatgataacttgtgctcttaaggcacatgttaaagatttcataaatggtaaatattcattacaaaacattaatttt 8981788  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 245
Target Start/End: Complemental strand, 47556339 - 47556310
Alignment:
Q  216 ttataaaccattttcatagaacacaaccat 245  Q
    ||||||||||||||||||||||||||||||    
T  47556339 ttataaaccattttcatagaacacaaccat 47556310  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 30717258 - 30717334
Alignment:
Q  111 tcatgataacttgtgcttttatgatacatgttatgaatttcataaatgaaaaatatttattacaaaacattaatttt 187  Q
    ||||| |||||||||  |||| | ||||||||| | |||| |||||    |||||||||||||||||||||||||||    
T  30717258 tcatgttaacttgtgtctttagggtacatgttaaggattttataaacagtaaatatttattacaaaacattaatttt 30717334  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 46444296 - 46444256
Alignment:
Q  147 atttcataaatgaaaaatatttattacaaaacattaatttt 187  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  46444296 atttcataaatgataaatatttattacaaaacattaatttt 46444256  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 39267565 - 39267614
Alignment:
Q  138 atgttatgaatttcataaatgaaaaatatttattacaaaacattaatttt 187  Q
    |||||| | |||| |||||||| |||||||||||||||||||||||||||    
T  39267565 atgttaaggattttataaatgataaatatttattacaaaacattaatttt 39267614  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 48801936 - 48801997
Alignment:
Q  126 cttttatgatacatgttatgaatttcataaatgaaaaatatttattacaaaacattaatttt 187  Q
    ||||||||| |||||||| | ||| ||||||||| |||||||||||| |||| |||||||||    
T  48801936 cttttatgaaacatgttaaggattccataaatgataaatatttattaaaaaatattaatttt 48801997  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 1846275 - 1846235
Alignment:
Q  147 atttcataaatgaaaaatatttattacaaaacattaatttt 187  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  1846275 atttcataaatggtaaatatttattacaaaacattaatttt 1846235  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 41377931 - 41378010
Alignment:
Q  111 tcatgataacttgtgcttttatgatacatgttatgaatttcataaatgaaaaatatttattacaaaacattaatttttaa 190  Q
    ||||| |||||||| | ||||||| ||||||||   |||| |||||||  |||||||||||||||||  |||||||||||    
T  41377931 tcatgctaacttgtacatttatgacacatgttaaatattttataaatggtaaatatttattacaaaattttaatttttaa 41378010  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 20668048 - 20668085
Alignment:
Q  153 taaatgaaaaatatttattacaaaacattaatttttaa 190  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  20668048 taaatgataaatatttattacaaaatattaatttttaa 20668085  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 190
Target Start/End: Original strand, 32296178 - 32296207
Alignment:
Q  161 aaatatttattacaaaacattaatttttaa 190  Q
    ||||||||||||||||||||||||||||||    
T  32296178 aaatatttattacaaaacattaatttttaa 32296207  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 33653078 - 33653147
Alignment:
Q  118 aacttgtgcttttatgatacatgttatgaatttcataaatgaaaaatatttattacaaaacattaatttt 187  Q
    |||||||||| ||| |  |||| ||| | ||||||||||||| |||| ||||||| ||||||||||||||    
T  33653078 aacttgtgctcttagggcacatattaaggatttcataaatgataaatttttattataaaacattaatttt 33653147  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 12619528 - 12619488
Alignment:
Q  147 atttcataaatgaaaaatatttattacaaaacattaatttt 187  Q
    ||||||||| ||  |||||||||||||||||||||||||||    
T  12619528 atttcataattggtaaatatttattacaaaacattaatttt 12619488  T

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Target: scaffold0193 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 19994 - 20076
Alignment:
Q  105 ataaggtcatgataacttgtgcttttatgatacatgttatgaatttcataaatgaaaaatatttattacaaaacattaatttt 187  Q
    ||||||||||| ||||||||    ||| |||||||||||  ||||  |||||||  |||||||||||||||||||||||||||    
T  19994 ataaggtcatgctaacttgtatccttaagatacatgttaaaaattatataaatggtaaatatttattacaaaacattaatttt 20076  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 41068390 - 41068310
Alignment:
Q  109 ggtcatgataacttgtgcttttatgatacatgttatgaatttcataaatgaaaaatatttattacaaaacattaatttttaa 190  Q
    ||||||| ||||||||||  || ||| || ||||| || || ||||||||| |||||||||| |||||||||||||||||||    
T  41068390 ggtcatgttaacttgtgcccttgtgacacgtgttagga-ttccataaatgataaatatttatcacaaaacattaatttttaa 41068310  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 25985106 - 25985182
Alignment:
Q  110 gtcatgataacttgtgcttttatgatacatgttatgaatttcataaatgaaaaatatttattacaaaacattaatttt 187  Q
    |||||| |||||||||  |||| || |||||||| ||||| ||||||||  |||||||||||||||||| ||||||||    
T  25985106 gtcatgctaacttgtgtcttta-gacacatgttaagaattccataaatggtaaatatttattacaaaaccttaatttt 25985182  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 14395216 - 14395146
Alignment:
Q  117 taacttgtgcttttatgatacatgttatgaatttcataaatgaaaaatatttattacaaaacattaatttt 187  Q
    |||||||||| ||||||  |||||||| | |||| |||||||  |||||||||||| |||| |||||||||    
T  14395216 taacttgtgcatttatggcacatgttaaggattttataaatggtaaatatttattataaaatattaatttt 14395146  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 30353947 - 30354000
Alignment:
Q  135 tacatgttatgaatttcataaatgaaaaatatttattacaaaacattaattttt 188  Q
    ||||||||| | |||| || ||||| ||||||||||||||||| ||||||||||    
T  30353947 tacatgttaaggattttatcaatgataaatatttattacaaaatattaattttt 30354000  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 32904893 - 32904852
Alignment:
Q  146 aatttcataaatgaaaaatatttattacaaaacattaatttt 187  Q
    ||||||||||||   |||||||||||||||||||||||||||    
T  32904893 aatttcataaatagtaaatatttattacaaaacattaatttt 32904852  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 190
Target Start/End: Complemental strand, 35319367 - 35319338
Alignment:
Q  161 aaatatttattacaaaacattaatttttaa 190  Q
    ||||||||||||||||||||||||||||||    
T  35319367 aaatatttattacaaaacattaatttttaa 35319338  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 11147026 - 11146994
Alignment:
Q  151 cataaatgaaaaatatttattacaaaacattaa 183  Q
    ||||||||| |||||||||||||||||||||||    
T  11147026 cataaatgataaatatttattacaaaacattaa 11146994  T

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Target: scaffold0008 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 240726 - 240662
Alignment:
Q  117 taacttgtgcttttatgatacatgttatgaatttcataaatgaaaaatatttattacaaaacatt 181  Q
    ||||||||||  |||||| |||||||| | ||| ||||||||| |||||||||||| ||||||||    
T  240726 taacttgtgcccttatgacacatgttaaggattccataaatgataaatatttattataaaacatt 240662  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 6519478 - 6519533
Alignment:
Q  135 tacatgttatgaatttcataaatgaaaaatatttattacaaaacattaatttttaa 190  Q
    ||||||||| | |||||||||| || | | ||||||||||||||||||||||||||    
T  6519478 tacatgttaaggatttcataaacgagataaatttattacaaaacattaatttttaa 6519533  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 36593847 - 36593887
Alignment:
Q  147 atttcataaatgaaaaatatttattacaaaacattaatttt 187  Q
    |||||||||||   |||||||||||||||||||||||||||    
T  36593847 atttcataaatagtaaatatttattacaaaacattaatttt 36593887  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 44565172 - 44565212
Alignment:
Q  147 atttcataaatgaaaaatatttattacaaaacattaatttt 187  Q
    |||| |||||||  |||||||||||||||||||||||||||    
T  44565172 attttataaatggtaaatatttattacaaaacattaatttt 44565212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 45843608 - 45843648
Alignment:
Q  147 atttcataaatgaaaaatatttattacaaaacattaatttt 187  Q
    |||| |||||||| ||||||||||||||||| |||||||||    
T  45843608 attttataaatgataaatatttattacaaaatattaatttt 45843648  T

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