View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16729_low_11 (Length: 255)
Name: NF16729_low_11
Description: NF16729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16729_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 43069466 - 43069243
Alignment:
| Q |
6 |
tgatcaatcatctacgtgtagaataagtaatataataattaagaagatttcatttcatcaaaaaatatgagcgattcaaaattttcctcaata-ttttgt |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43069466 |
tgatcaatcatctacgtgtagaataagtaatataataattaagaagatttcatttcatcaaaaaatatgagcgattcaaaattttcctcaatatttttgt |
43069367 |
T |
|
| Q |
105 |
gcatgaaatgaaacaaaaagctcttacaagattgaatttcaaaagnnnnnnngtacggcaaaggaagatctagaccctccaaggaaactccctcttctag |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43069366 |
gcatgaaatgaaacaaaaagctcttacaagattgaatttcaaaagtttttttgtacggcaaaggaagatctagaccctccaaggaaactccctcttctag |
43069267 |
T |
|
| Q |
205 |
ttattatacaagctcctcttgaag |
228 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
43069266 |
ttattatacaagctcctcttgaag |
43069243 |
T |
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