View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16729_low_3 (Length: 462)
Name: NF16729_low_3
Description: NF16729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16729_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 3 - 449
Target Start/End: Complemental strand, 52725703 - 52725262
Alignment:
| Q |
3 |
ttaccaaagggtgtcaaagatatctcagataagcaatatgaagctcagcaatgtaaatactaattttgtattttcaatagctaatcaaaggatgaagtaa |
102 |
Q |
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| T |
52725703 |
ttaccaaagggtgtcaaagatatctcagataagcaatatgaagctcagcaatgtaaatactaattttgtattttcaatagctaatctaaggatgaagtaa |
52725604 |
T |
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| Q |
103 |
atgaatgggggaaaagactaacttgaatgatatcatgctcggatatgtcttttgcggccattctactgtcgataattgctggaaatgaagggaataagtt |
202 |
Q |
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| T |
52725603 |
atgaatgggggaaaagactaacttgaatgatatcatgcttggatatgtcttttgcggccattctactgtcaataattgctggaaatgaagggaataagtt |
52725504 |
T |
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| Q |
203 |
gcaagta-agaattaaaggatgagaaaacagtagataaatcatgagtgagaagagtatatttaccaacaatacattagttagtaaatctcatgagagttg |
301 |
Q |
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| T |
52725503 |
gcaagtagagaattaaaggatgagaaaacagtagataaatcatgagtgagaagggtatatttaccaacaatacattagttagtaaatctcatgagagttg |
52725404 |
T |
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| Q |
302 |
aaagtaaattggagaaagaatgaa--tgtttaggaactaaattgatccttgattaaatgaacagtaaaaatat-aaaaaagagtgttaaaggaaggaaga |
398 |
Q |
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| T |
52725403 |
aaagtaaattggagaaagaatgaaattgatcattgattaaa-tgaacatgaattaaatgaacagtaaaaatataaaaaaagagtgttaaagg-------- |
52725313 |
T |
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| Q |
399 |
aagaaagacagacatcgaacgagtctgtaagcatccctcttgtattcatct |
449 |
Q |
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| T |
52725312 |
aagaaagacagacatcgaacgagtctgtaagcatccctcttgtattcatct |
52725262 |
T |
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