View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16729_low_8 (Length: 338)
Name: NF16729_low_8
Description: NF16729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16729_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 23769481 - 23769790
Alignment:
| Q |
12 |
atcatcatttctcccattgcctttgtgaacacataagtatcttgccatccatatcttctagccctatatagaaaaatcaaatcaaattaagcttgtgagt |
111 |
Q |
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| T |
23769481 |
atcatcatttctcccattgcctttgtgaacacataagtatcttgccatccatatcttctagccctatatagaaaaatcaaatcaaattaagcttgtgagt |
23769580 |
T |
|
| Q |
112 |
tttaagaatattcacttaattgatggataaatagatacgttagtttcgagaaaacaaatatagatacattatttaag-nnnnnnnaaccatctgattttt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
23769581 |
tttaagaatattcacttaattgatggataaatagatacgttagtttcgagaaaacaaatatagatgcattatttaagttttttttaaccatctgattttt |
23769680 |
T |
|
| Q |
211 |
cagggaaaaggagttctcgtaattcataattcgatcagaaggtaagtaaagccttattgatgaatgtaaaacataggatcactaaaaatacctctctaga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
23769681 |
cagggaaaaggagttctcgtaattcataattcgatcagaaggtaagtaaagtcttattgatgaatgtgaaacatagggtcactaaaaatacctctctaga |
23769780 |
T |
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| Q |
311 |
cccatctcct |
320 |
Q |
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|||||||||| |
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| T |
23769781 |
cccatctcct |
23769790 |
T |
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