View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16729_low_9 (Length: 307)
Name: NF16729_low_9
Description: NF16729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16729_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 38585223 - 38585002
Alignment:
| Q |
19 |
caccatggtgatttcaaaaagtttctcgaatcttctttctattttcttcatcatcttcctctctcatgctacggtttcttaatcttccatttcattcttc |
118 |
Q |
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| T |
38585223 |
caccatggtgatttcaaaaagcttctcgaatcttctttctattttcttcatcatcttcctctctcatgctacggtttcttaatcttccatttcattcttc |
38585124 |
T |
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| Q |
119 |
caggttgttgcacagaaactcaaggaagctgaaatcaccgagcaggattcacttcttctggtgattaaccaacgcttcgttttcatttccatctcatagc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
38585123 |
caggttgttgcacagaaactcaaggaagctgaaatcaccgagcaggattcacttcttctggtgattaactaacgcttcgttttcattttcatctcatagc |
38585024 |
T |
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| Q |
219 |
actaaaatcatacggatctgag |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
38585023 |
actaaaatcatacggatctgag |
38585002 |
T |
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