View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16730_high_1 (Length: 787)
Name: NF16730_high_1
Description: NF16730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16730_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 17 - 770
Target Start/End: Original strand, 2655492 - 2656211
Alignment:
| Q |
17 |
cataggcgtaaaagaaggagaagcattcataaaattaagtttgcttcgttaaaacagaatgacattgatgcagaaataattttgctatgtaaaactgcat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2655492 |
cataggcgtaaaagaaggagaagcattcataaaattaagtttgcttcgttaagacagaatgacattgatgcagaaacaattttgctatgtaaaactgcat |
2655591 |
T |
|
| Q |
117 |
ttggagatttcaatttgtgattataaattaaaagagttgccttattggaatcagtgatcaatcaaaatgact-aattgtggtttagactaatcaatcaaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | || ||||||||||||||||||||||||||| |
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| T |
2655592 |
ttggagatttcaatttgtgattataaattaaaagagttgccttattggaatcact----------atggcctgaattgtggtttagactaatcaatcaaa |
2655681 |
T |
|
| Q |
216 |
tgaaccaaattattatcagccgcgaaggaaaataatacgaaaacatgtcaatgacttttattatggattcgtaatattagattataggaaatagcaattg |
315 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2655682 |
tgaaccaaattattattagcagcgaaggaaaataatacgaaaacatgtcaatgacttttattatggattcgtaatattagattatagcaaatagcaattg |
2655781 |
T |
|
| Q |
316 |
nnnnnnn-caaagtcttgaaatcaaatgactaattgcataatagatgaacagaacataatctgccatctgatttttaacgacaaagaaaatgtagacaaa |
414 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
2655782 |
aagaaaaacaaagtcttgaaatcaaatgactaattgtataatagatgaacagaacataatctgccatctgattattaacgacaaagaaaatgtagataaa |
2655881 |
T |
|
| Q |
415 |
gaggtaacatcattnnnnnnncatcaaacagatgatcctcgtcaacgattattacgtcagctttaatctttgggttcaattttcacgcgcatgcaccatc |
514 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2655882 |
caggtaacatcattaaaaaaacatcaaacatatgatcctcgtcaacgattattacgtcagctttaatctttgggttcaattttcacg----agcaccatc |
2655977 |
T |
|
| Q |
515 |
ttcgacggctgtgtgagagatgcttgtccaacctcgccacttccatttgtaacagaatccatatcaccagatgatcttttcataaaagacttaccaacag |
614 |
Q |
| |
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|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
2655978 |
tttgacggctgtgtgacagatgcttgtccaacctcgccacttccatttgtaacagaatccatatcaccggatgatcttttcatagaagacttaccaacag |
2656077 |
T |
|
| Q |
615 |
gagtatggaccatgtttgtgtcgctgcacgaatcaccacattctccaacctgctgctgcaaaatatggttttacaataatcaagataaagtaacaaaatt |
714 |
Q |
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| T |
2656078 |
gagtatgg----------------------aatcaccacattctacaacctgctgctgcaaaatatgattttacaataatcaagataaaataacaaaatt |
2656155 |
T |
|
| Q |
715 |
ctaacactataatccaagttataagtgtattaaagatcgtaaggttataccatgtt |
770 |
Q |
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| T |
2656156 |
ctaacattataatccaagttataagtgtattaaagattataaggttataccatgtt |
2656211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 507 - 666
Target Start/End: Original strand, 47764474 - 47764633
Alignment:
| Q |
507 |
gcaccatcttcgacggctgtgtgagagatgcttgtccaacctcgccacttccatttgtaacagaatccatatcaccagatgatcttttcataaaagactt |
606 |
Q |
| |
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||||||||||||| |||||||| | |||||||||||||||||||||| ||||||| || |||||| |||| ||| ||||||||||||||| |||| || |
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| T |
47764474 |
gcaccatcttcgagggctgtgtcacagatgcttgtccaacctcgccatttccattcgttgaagaatctatattaccggatgatcttttcatagaagattt |
47764573 |
T |
|
| Q |
607 |
accaacaggagtatggaccatgtttgtgtcgctgcacgaatcaccacattctccaacctg |
666 |
Q |
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||||||||||| ||||| |||||||||||||| |||||||| ||||||||| ||||||| |
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| T |
47764574 |
gccaacaggagtgtggacaatgtttgtgtcgctacacgaatcgccacattctacaacctg |
47764633 |
T |
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