View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16730_high_14 (Length: 237)
Name: NF16730_high_14
Description: NF16730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16730_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4792616 - 4792836
Alignment:
| Q |
1 |
cgatacaaatagagaaaaatacaatgaagagcttcgccaatcttttatttattactgctgcaatactctcctcaaaaagccataaattagttgaaggaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4792616 |
cgatacaaatagagaaaaatacaatgaagagcttcgccaatcttttatttattactgctgcaatactctcctcaaaaagccataaattagttgaaggaga |
4792715 |
T |
|
| Q |
101 |
gatatgccctgcaaaagaaattacacaacacactacatttgcatttctccttctttgtatacaaacttaataccttataaatcatggacaatttctccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4792716 |
gatatgccctgcaaaagaaattacacaacacactacatttgcatttctccttctttgtatacaaacttaataccttataaatcatggacaatttctccaa |
4792815 |
T |
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| Q |
201 |
taactatttgtttttcaaatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
4792816 |
taactatttgtttttcaaatt |
4792836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 2664 - 2570
Alignment:
| Q |
1 |
cgatacaaatagagaaaaatacaatgaagagcttcgccaatcttttatttattactgctgcaatactctcctcaaaaagccataaattagttgaagga |
98 |
Q |
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||||| || |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
2664 |
cgatagaactagagaaaaatacaatgaagagattcgccaatcttttattta---ctgctgcaatactctcctcaaaaagccaaaaattaattgaagga |
2570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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