View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16730_high_2 (Length: 638)
Name: NF16730_high_2
Description: NF16730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16730_high_2 |
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| [»] scaffold0402 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 9 - 571
Target Start/End: Complemental strand, 3270 - 2695
Alignment:
| Q |
9 |
attatactacgatagaaggttttccttccaattgccttgcaattccgctggaaaatgatgactaaagaaaatgaggataagaaattgtagaaagttacta |
108 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3270 |
attatactaagatagaaggttttccttccacttgccttgcaattccgctggaaaatgatgactaaagaaaatgaggataagaaattgtagaaagttacta |
3171 |
T |
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| Q |
109 |
ttatttaactcaacaaatttcaatttaaaccattacataagagaagcagttaaaagaaaaatcaaagagcagtcc-aaagagtcatcaaattaaatgaca |
207 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3170 |
ttatttaactcaacaaatttcaattgaaaccattacataagagaaccagttaaaagaaaaatcaaagagcagtccaaaagagtcatcaaattaaatgaca |
3071 |
T |
|
| Q |
208 |
tattgctccctttggggaatcagaggaaaattatatgtccgagaaatatggaaatgacactaaaatcgggatttcaaaacatttgttagcaggattatgc |
307 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
3070 |
tattgctccctttggggaatcataggaaaattatatgtccgagaaatatagaaataacaataaaatcgggatttcaaaacatttgttggcaggattatgc |
2971 |
T |
|
| Q |
308 |
agtagaaaatgattgatat-------------aaatcatccaaaatatgagacaatctagagctaactaccaaggatgaaaggatcgtacaacagctgaa |
394 |
Q |
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|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2970 |
tgtggaaaatgattgatatagaaggctaatacaaatcatccaaaatatgagacaatctagagctaactaccaaggatgaaaggatcgtacaacagctgaa |
2871 |
T |
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| Q |
395 |
cataaaagctgtgaattataacttctattgaaaagaagaattaaaatcatttacgtaagagagagtgatgataactattatctcatacattcaagaaagt |
494 |
Q |
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||||||||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2870 |
cataaaagctgtgaagtataacttctattgaaaagaaaatttaaaatc-tttacgtaagagagagtgatgataactattatctcatacattcaaaaaagt |
2772 |
T |
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| Q |
495 |
tctggatttatagcatgatattttaaaaatccaaaaaataaacatatatgtttgctttcaacttcatccctaggaag |
571 |
Q |
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| T |
2771 |
tctggatttatagcatgattttttaaaaatccaaaatatgcacatatatgtttgctttcaacttcatccctaggaag |
2695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 593 - 638
Target Start/End: Complemental strand, 2694 - 2649
Alignment:
| Q |
593 |
ttaacacttaaggaaattagtctaatttatcgatacaaatagagaa |
638 |
Q |
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| T |
2694 |
ttaacacttaaggaaattggtctaatttatcgatagaactagagaa |
2649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 64 - 390
Target Start/End: Complemental strand, 19336115 - 19335775
Alignment:
| Q |
64 |
tgatgactaaagaaaatgaggataagaaattgtagaaagttactattatttaactcaacaaatttcaatttaaaccattacataagagaagcagttaaaa |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
19336115 |
tgatgactaaagaaaatgaggataagaaattgtagaaagttactattatttaactcaacaaaattcaatttaaaccattacataagagaaccagttaaaa |
19336016 |
T |
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| Q |
164 |
gaaaaatcaaagagcagtccaaa-gagtcatcaaattaaatgacatattgctccctttggggaatcagaggaaaattatatgtccgagaaatatggaaat |
262 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19336015 |
gaaaaatcaaagagcagtccaaaagagtcatcaaattaaatgacatattgctccctttggggaatcagaggaaaattatatgtccgagaaatatagaaat |
19335916 |
T |
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| Q |
263 |
gacactaaaatcgggatttcaaaacatttgttagcaggattatgcagtagaaaatgattgatat-------------aaatcatccaaaatatgagacaa |
349 |
Q |
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||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
19335915 |
aacaataaaatcgggatttcaaaacatttgttggcaggattatgcagtggaaaatgattgatatagaaggctaatacaaatcatccaaaatatgagacaa |
19335816 |
T |
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| Q |
350 |
tctagagctaactaccaaggatgaaaggatcgtacaacagc |
390 |
Q |
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| T |
19335815 |
tctagagctaactaccaaggatgaaaggatcgtacaacagc |
19335775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 64 - 391
Target Start/End: Complemental strand, 15274 - 14933
Alignment:
| Q |
64 |
tgatgactaaagaaaatgaggataagaaattgtagaaagttactattatttaactcaacaaatttcaatttaaaccattacataagagaagcagttaaaa |
163 |
Q |
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| T |
15274 |
tgatgactaaagaaaatgaggataagaaattgtagaaagttactattatttaactcaacaaatttcaatttaaaccattacataagagaaccagttaaaa |
15175 |
T |
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| Q |
164 |
gaaaaatcaaagagcagtcc-aaagagtcatcaaattaaatgacatattgctccctttggggaatcagaggaaaattatatgtccgagaaatatggaaat |
262 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
15174 |
gaaaaatcaaagagcagtccaaaagagtcatcaaattaaatgacatattgctccctttggggaatcataggaaaattatatgtccgagaaatatagaaat |
15075 |
T |
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| Q |
263 |
gacactaaaatcgggatttcaaaacatttgttagcaggattatgcagtagaaaatgattgatat-------------aaatcatccaaaatatgagacaa |
349 |
Q |
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||| ||||||||||||||||||||||||||| |||||||| ||| || ||||||||||||||| ||||||||||||||||||||||| |
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| T |
15074 |
aacaataaaatcgggatttcaaaacatttgttggcaggattttgctgtggaaaatgattgatatagaaggctaatacaaatcatccaaaatatgagacaa |
14975 |
T |
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| Q |
350 |
tctagagctaactaccaaggatgaaaggatcgtacaacagct |
391 |
Q |
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| T |
14974 |
tctagagctaactaccaaggatgaaaggatcgtacaacagct |
14933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 64 - 391
Target Start/End: Original strand, 17938669 - 17939010
Alignment:
| Q |
64 |
tgatgactaaagaaaatgaggataagaaattgtagaaagttactattatttaactcaacaaatttcaatttaaaccattacataagagaagcagttaaaa |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17938669 |
tgatgactaaagaaaatgaggataagaaattgtagaaagttactattatttaactcaacaaatttcaatttaaaccattacataagagaaccagttaaaa |
17938768 |
T |
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| Q |
164 |
gaaaaatcaaagagcagtcc-aaagagtcatcaaattaaatgacatattgctccctttggggaatcagaggaaaattatatgtccgagaaatatggaaat |
262 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
17938769 |
gaaaaatcaaagagcagtccaaaagagtcatcaaattaaatgacatattgctccctttggggaatcataggaaaattatatgtccgagaaatatagaaat |
17938868 |
T |
|
| Q |
263 |
gacactaaaatcgggatttcaaaacatttgttagcaggattatgcagtagaaaatgattgatat-------------aaatcatccaaaatatgagacaa |
349 |
Q |
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||| ||||||||||||||||||||||||||| |||||||| ||| || ||||||||||||||| ||||||||||||||||||||||| |
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| T |
17938869 |
aacaataaaatcgggatttcaaaacatttgttggcaggattttgctgtggaaaatgattgatatagaaggctaatacaaatcatccaaaatatgagacaa |
17938968 |
T |
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| Q |
350 |
tctagagctaactaccaaggatgaaaggatcgtacaacagct |
391 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
17938969 |
tctagagctaactaccaaggatgaaaggatcgtacaacagct |
17939010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 450 - 638
Target Start/End: Original strand, 4792443 - 4792631
Alignment:
| Q |
450 |
taagagagagtgatgataactattatctcatacattcaagaaagttctggatttatagcatgatattttaaaaatccaaaaaataaacatatatgtttgc |
549 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4792443 |
taagaaagagtgatgataactattatctcatacattcaagaaagttctggatttatagcatgatattttaaaaatccaaaaaataaacatatatgtttgc |
4792542 |
T |
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| Q |
550 |
tttcaacttcatccctaggaagctaaaacaattgatcactaatttaacacttaaggaaattagtctaatttatcgatacaaatagagaa |
638 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4792543 |
tttcaacttcatccctaggaagctaaaacaattgatcactaatttaacacttaaggaaattagtctaatttatcgatacaaatagagaa |
4792631 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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