View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16730_high_6 (Length: 375)

Name: NF16730_high_6
Description: NF16730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16730_high_6
NF16730_high_6
[»] chr1 (2 HSPs)
chr1 (1-281)||(5333822-5334116)
chr1 (97-169)||(17010879-17010952)
[»] chr6 (3 HSPs)
chr6 (16-158)||(14637809-14637950)
chr6 (104-173)||(26339383-26339453)
chr6 (97-165)||(15669562-15669631)
[»] chr7 (2 HSPs)
chr7 (44-178)||(9792459-9792592)
chr7 (104-178)||(28106885-28106960)
[»] chr4 (2 HSPs)
chr4 (97-173)||(44742537-44742614)
chr4 (97-173)||(13089644-13089721)
[»] chr8 (2 HSPs)
chr8 (17-145)||(24955119-24955245)
chr8 (104-178)||(24970867-24970942)
[»] chr5 (2 HSPs)
chr5 (44-165)||(29963912-29964032)
chr5 (44-165)||(30010766-30010886)
[»] chr3 (1 HSPs)
chr3 (97-173)||(36330676-36330753)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 5333822 - 5334116
Alignment:
Q  1 gctgatagaaatgctaaaaagttgttccaaagttcaatttcacatcttatttttaaaattatttttgttggatttccttctttacnnnnnnnngtaactt 100  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||        |||||||    
T  5333822 gctgatataaatgctgaaaagttgttccaaagttcaatttcacatcttatttttaaaatcatttttgttggatttccttctttacaaaaaa--gtaactt 5333919  T
Q  101 attttattaagagttttactaaaattatgtttggctccacttcttttagaagtaaaagataagtgaaaaataaagaggt----------------ttgta 184  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||                 || ||    
T  5333920 attttattaagagttttactaaaattatgtttggctccacttctcttagaagtaaaagattagtgaaaaataaagaggaccaaacatactataaattcta 5334019  T
Q  185 tttttatatccatattcaatgccctaagttaatggttaacttatcgtaaaatttaaagcggaagggtagatcatagaggttttaggaaaacactacc 281  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5334020 tttttatatccttattcaatgccctaagttaatggttaacttatcgtaaaatttaaagcggaagggtagatcatagaggttttaggaaaacactacc 5334116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 17010952 - 17010879
Alignment:
Q  97 acttattttattaagagttttactaaaattatgtttggctccacttctt-ttagaagtaaaagataagtgaaaa 169  Q
    |||| |||||||||||  || | ||||||| |||||||| ||||||||| ||||||||| ||||||||||||||    
T  17010952 acttcttttattaagaacttaattaaaattgtgtttggccccacttcttcttagaagtagaagataagtgaaaa 17010879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 14637809 - 14637950
Alignment:
Q  16 aaaaagttgttccaaagttcaatttcacatcttatttttaaaattatttttgttggatttccttctttacnnnnnnnngtaacttattttattaagagtt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||        || ||||||||||||||||  |    
T  14637809 aaaaagttgttctaaagttcaatttcacatcttatttttaaagtcatttttgttggatttccttctttac--aaaaacgtcacttattttattaagaact 14637906  T
Q  116 ttactaaaattatgtttggctccacttct-tttagaagtaaaag 158  Q
    |||||||||||||||||||| ||||||||  |||||||||||||    
T  14637907 ttactaaaattatgtttggccccacttctccttagaagtaaaag 14637950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 26339383 - 26339453
Alignment:
Q  104 ttattaagagttttactaaaattatgtttggctccacttct-tttagaagtaaaagataagtgaaaaataa 173  Q
    |||||||||| ||||  ||||||||||||||| |||||||| |||| ||||||||||||| || |||||||    
T  26339383 ttattaagagctttatcaaaattatgtttggccccacttctctttaaaagtaaaagataaatggaaaataa 26339453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 15669562 - 15669631
Alignment:
Q  97 acttattttattaagagttttactaaaattatgtttggctccacttctt-ttagaagtaaaagataagtg 165  Q
    |||||||||||||||| ||| | ||||||| |||||| | ||||||||| ||||||||| ||||||||||    
T  15669562 acttattttattaagaatttaattaaaattgtgtttgaccccacttcttcttagaagtagaagataagtg 15669631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 178
Target Start/End: Original strand, 9792459 - 9792592
Alignment:
Q  44 atcttatttttaaaattatttttgttggatttccttctttacnnnnnnnngtaacttattttattaagagttttactaaaattatgtttggctccacttc 143  Q
    |||||||||| ||| | |||||||||||||||||||||||||        || |||| |||||||||||| |||| ||||||| |||||||| |||||||    
T  9792459 atcttattttcaaagtcatttttgttggatttccttctttacaaaaaa--gtcacttcttttattaagagctttattaaaattgtgtttggccccacttc 9792556  T
Q  144 tt-ttagaagtaaaagataagtgaaaaataaagagg 178  Q
    || ||| |||||||||||||||| ||||||| ||||    
T  9792557 ttcttaaaagtaaaagataagtggaaaataaggagg 9792592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 28106960 - 28106885
Alignment:
Q  104 ttattaagagttttactaaaattatgtttggctccacttctt-ttagaagtaaaagataagtgaaaaataaagagg 178  Q
    |||||||||  |||| ||||||||||||||| || ||||||| ||||||||| |||| ||||| ||||||| ||||    
T  28106960 ttattaagaactttattaaaattatgtttggttctacttcttcttagaagtagaagagaagtggaaaataaggagg 28106885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 44742614 - 44742537
Alignment:
Q  97 acttattttattaagagttttactaaaattatgtttggctccacttctt-ttagaagtaaaagataagtgaaaaataa 173  Q
    ||||||||||||||||| |||| ||||||| |||||||| ||||||||| ||||||||| |||| |||||||||||||    
T  44742614 acttattttattaagagctttattaaaattgtgtttggccccacttcttcttagaagtagaagagaagtgaaaaataa 44742537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 13089721 - 13089644
Alignment:
Q  97 acttattttattaagagttttactaaaattatgtttggctccacttctt-ttagaagtaaaagataagtgaaaaataa 173  Q
    ||||||||||||||||| |||  ||||||| |||||| | ||||||||| ||||||||| |||| |||||||||||||    
T  13089721 acttattttattaagagctttgttaaaattgtgtttgaccccacttcttcttagaagtagaagagaagtgaaaaataa 13089644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 24955245 - 24955119
Alignment:
Q  17 aaaagttgttccaaagttcaatttcacatcttatttttaaaattatttttgttggatttccttctttacnnnnnnnngtaacttattttattaagagttt 116  Q
    |||||||||| ||||||||| |||| ||||||||||||||| ||| |||| |||| ||| ||||||||         || ||||||||||||||||| ||    
T  24955245 aaaagttgtttcaaagttcactttcccatcttatttttaaagttacttttattggtttttcttcttta--taaaaaagttacttattttattaagagctt 24955148  T
Q  117 tactaaaattatgtttggctccacttctt 145  Q
    || |||||||||||||||| | |||||||    
T  24955147 tattaaaattatgtttggccctacttctt 24955119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 24970942 - 24970867
Alignment:
Q  104 ttattaagagttttactaaaattatgtttggctccacttct-tttagaagtaaaagataagtgaaaaataaagagg 178  Q
    |||||||||  |||| |||||||||||||||| | |||||| |||||||||| |||| ||||||||||||| ||||    
T  24970942 ttattaagaactttattaaaattatgtttggccctacttctctttagaagtagaagagaagtgaaaaataaggagg 24970867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 29964032 - 29963912
Alignment:
Q  44 atcttatttttaaaattatttttgttggatttccttctttacnnnnnnnngtaacttattttattaagagttttactaaaattatgtttggctccacttc 143  Q
    |||||||||| ||| | | |||||||||||||||||||||||        || |||| | |||||||||| ||||  ||||||||||||||| |||||||    
T  29964032 atcttattttcaaagtcacttttgttggatttccttctttacaaaaaa--gtcacttctattattaagagctttatcaaaattatgtttggccccacttc 29963935  T
Q  144 t-tttagaagtaaaagataagtg 165  Q
    | |||||||||||||||||||||    
T  29963934 tctttagaagtaaaagataagtg 29963912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 165
Target Start/End: Original strand, 30010766 - 30010886
Alignment:
Q  44 atcttatttttaaaattatttttgttggatttccttctttacnnnnnnnngtaacttattttattaagagttttactaaaattatgtttggctccacttc 143  Q
    |||||||||| ||| | | |||||||||||||||||||||||        || |||| | |||||||||| ||||  ||||||||||||||| |||||||    
T  30010766 atcttattttcaaagtcacttttgttggatttccttctttacaaaaaa--gtcacttctattattaagagctttatcaaaattatgtttggccccacttc 30010863  T
Q  144 t-tttagaagtaaaagataagtg 165  Q
    | |||||||||||||||||||||    
T  30010864 tctttagaagtaaaagataagtg 30010886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 36330753 - 36330676
Alignment:
Q  97 acttattttattaagagttttactaaaattatgtttggctccacttctt-ttagaagtaaaagataagtgaaaaataa 173  Q
    |||||||||||||| || |||| ||||||| |||||| | ||||||||| ||||||||| |||| ||||| |||||||    
T  36330753 acttattttattaaaagctttattaaaattgtgtttgaccccacttcttcttagaagtagaagagaagtggaaaataa 36330676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University