View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16730_high_7 (Length: 352)
Name: NF16730_high_7
Description: NF16730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16730_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 336
Target Start/End: Original strand, 8480287 - 8480610
Alignment:
| Q |
13 |
caaaggcagatcctcaaaaaacaaaagaagaagacaaaccatttggcttgtaggtacttgactggctagacttgtacttagcatggactaaacatgcaag |
112 |
Q |
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| T |
8480287 |
caaaggcagatcctcaaaaaacaaaagaagaagacaaaccatttggcttgtaggtacttgactggctagacttgtacttagcatggactaaacatgcaag |
8480386 |
T |
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| Q |
113 |
ctgcaccaacatgcaaaaacacattaacaaagccaaaatcagaatataaataaatatataaaccagatacatattcatcatatggattaaaacaaaactc |
212 |
Q |
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| T |
8480387 |
ctgcaccaacatgcaaaaacacattaacaaagccaaaatcagaatataaataaatatataaaccagatacatattcatcatatggattaaaacaaaactc |
8480486 |
T |
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| Q |
213 |
accgagaagtaacatttaactgatggcacccaagtattagagctaccagtatcaaaaatcacagtaaaagtctgaggaggagtaccaatggatatttcac |
312 |
Q |
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| T |
8480487 |
accgagaagtaacatttaactgatggcacccaagtattagagctaccagtatcgaaaatcacagtaaaagtctgaggaggagtaccaatggatatttcac |
8480586 |
T |
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| Q |
313 |
catagtactgagcatccaagtaat |
336 |
Q |
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| T |
8480587 |
catagtactgagcatccaagtaat |
8480610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 248 - 336
Target Start/End: Original strand, 55356718 - 55356806
Alignment:
| Q |
248 |
attagagctaccagtatcaaaaatcacagtaaaagtctgaggaggagtaccaatggatatttcaccatagtactgagcatccaagtaat |
336 |
Q |
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| T |
55356718 |
attagagctgccagtatcgaaaatgacagtgaacttctgaggagaggtaccaatggatatttcaccatagtattgagcatctaagtaat |
55356806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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