View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16730_high_8 (Length: 332)
Name: NF16730_high_8
Description: NF16730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16730_high_8 |
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| [»] scaffold0462 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 3570790 - 3571095
Alignment:
| Q |
18 |
ataccttcactatctgctggtttttgttcattcaaatgtcactttgccatgctgtttgtttgtttactgccttgtacatgttcagattttgaattgtttt |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3570790 |
atacctttactatctgctggtttttgttcattcaaatgtcactttgccctgttgtttgtttgtttgctgccttgtacatgttcagattttgaattgtttt |
3570889 |
T |
|
| Q |
118 |
ttaatattttaggtatatggaacgcctctgtactcaattgagaaatattgatgtgtatggtttcgttgatccatttttcattcatgcagaaaatgaccaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3570890 |
ttaatattttaggtatatggaacgcctctgtactcaattgagaaatattgatgtgtatggtttcgttgatccatttttcattcacgcagaaaatgaccaa |
3570989 |
T |
|
| Q |
218 |
gaaagttctcagtcacatatgaccgcaaagatgttctaggttaacaaagcttgttattttgcaccttacctgaaaaagttagtgtatttgatcttcatag |
317 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3570990 |
gaaagttctcagtcgcatatgaccgcaaagatgttcgaggttaacaaagctggttattttgcaccttacctgaaaaagttagggtatttgatcttcatag |
3571089 |
T |
|
| Q |
318 |
tattat |
323 |
Q |
| |
|
|||||| |
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| T |
3571090 |
tattat |
3571095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0462 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0462
Description:
Target: scaffold0462; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 36 - 323
Target Start/End: Complemental strand, 12987 - 12700
Alignment:
| Q |
36 |
ggtttttgttcattcaaatgtcactttgccatgctgtttgtttgtttactgccttgtacatgttcagattttgaattgttttttaatattttaggtatat |
135 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12987 |
ggtttttgttcattcaaatgtcactttgccctgctgtttggttgtttgctgccttgtacatgttcagattttgaattgttttttataattttaggtatat |
12888 |
T |
|
| Q |
136 |
ggaacgcctctgtactcaattgagaaatattgatgtgtatggtttcgttgatccatttttcattcatgcagaaaatgaccaagaaagttctcagtcacat |
235 |
Q |
| |
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|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| |
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| T |
12887 |
ggaacgcctctgtactcaattgggaaatactgatgtgtatggtttcgttgatccatttttcattcacgcggaaaatgaccaagaaagttctcagtctcat |
12788 |
T |
|
| Q |
236 |
atgaccgcaaagatgttctaggttaacaaagcttgttattttgcaccttacctgaaaaagttagtgtatttgatcttcatagtattat |
323 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12787 |
atgaccgcaaagatgttcgaggttaacaaagcttgttattttgcaccttatctgaaaaagttagtgtatttgatcttcatagtattat |
12700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 36 - 323
Target Start/End: Original strand, 4061051 - 4061339
Alignment:
| Q |
36 |
ggtttttgttcattcaaatgtcactttgccatgctgtttgtttgtttactgccttgtacatgttcagattttgaattgtttt-ttaatattttaggtata |
134 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4061051 |
ggtttttgttcattcaaatgtcactttgccctgctgtttgtttgtttactgccttgtacatgttcagattttgaattgtttttttaatattttaggtata |
4061150 |
T |
|
| Q |
135 |
tggaacgcctctgtactcaattgagaaatattgatgtgtatggtttcgttgatccatttttcattcatgcagaaaatgaccaagaaagttctcagtcaca |
234 |
Q |
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|||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||| || |
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| T |
4061151 |
tggaacgcctctatactcaattgggaaatattgatgtttatggtttcgttgatccatttttcattcacgcggaaaatgaccaagaaagttctcggtctca |
4061250 |
T |
|
| Q |
235 |
tatgaccgcaaagatgttctaggttaacaaagcttgttattttgcaccttacctgaaaaagttagtgtatttgatcttcatagtattat |
323 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4061251 |
tatgaccgcaaagatgttcgaggttaacaaaacttgttattttgcaccttacctgaaaaagtaagtgtatttgatcttcatagtattat |
4061339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 38 - 177
Target Start/End: Original strand, 11766584 - 11766722
Alignment:
| Q |
38 |
tttttgttcattcaaatgtcactttgccatgctgtttgtttgtttactgccttgtacatgttcagattttgaattgttttttaatattttaggtatatgg |
137 |
Q |
| |
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|||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
11766584 |
tttttgttcattcaaatg-cactttgccctgctgtttgtttgtttgctgccttgtacatgttcagattttgaattgttattgaatattttaggtatatgg |
11766682 |
T |
|
| Q |
138 |
aacgcctctgtactcaattgagaaatattgatgtgtatgg |
177 |
Q |
| |
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|| ||||||||||||||||| |||||| |||||||||||| |
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| T |
11766683 |
aatgcctctgtactcaattgggaaatagtgatgtgtatgg |
11766722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 36 - 323
Target Start/End: Complemental strand, 9103411 - 9103123
Alignment:
| Q |
36 |
ggtttttgttcattcaaatgtcactttgccatgctgtttgtttgttta-ctgccttgtacatgttcagattttgaattgttttttaatattttaggtata |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| || ||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
9103411 |
ggtttttgttcattcaaatgtcactttgccgtgctgtttggttattttgctgccttgtacatgttcagattttgaatttttttttataattttaggtata |
9103312 |
T |
|
| Q |
135 |
tggaacgcctctgtactcaattgagaaatattgatgtgtatggtttcgttgatccatttttcattcatgcagaaaatgaccaagaaagttctcagtcaca |
234 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || |
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| T |
9103311 |
tggaacgcctctgtactcaattgggaaatactgatgtgtatggtttcgttgatccatttttcattcacgcggaaaatgaccaagaaagttctcagtctca |
9103212 |
T |
|
| Q |
235 |
tatgaccgcaaagatgttctaggttaacaaagcttgttattttgcaccttacctgaaaaagttagtgtatttgatcttcatagtattat |
323 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
9103211 |
tatgaccgcaaagatgttcgaggttaacaaagcttgttattttgcaccttatctgaaaaagttagtgtatttgatcttcatagtattat |
9103123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 108 - 312
Target Start/End: Original strand, 17033164 - 17033368
Alignment:
| Q |
108 |
gaattgttttttaatattttaggtatatggaacgcctctgtactcaattgagaaatattgatgtgtatggtttcgttgatccatttttcattcatgcaga |
207 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| | | |||||||| ||| |||||| ||||||| |||| ||||||||||||||||| ||||||||||| |
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| T |
17033164 |
gaatagttttttaatattgtaggtatatggaacacgtatgtactcagttgggaaataatgatgtgcatgggttcgttgatccattttttattcatgcaga |
17033263 |
T |
|
| Q |
208 |
aaatgaccaagaaagttctcagtcacatatgaccgcaaagatgttctaggttaacaaagcttgttattttgcaccttacctgaaaaagttagtgtatttg |
307 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||||| ||||| ||| ||||||| |||||||||||||||||| |||| ||||| |||||||||| |
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|
| T |
17033264 |
aaatgaccaagatagttctcagtctcatataaccgcaaagctgttcgagggaaacaaagtttgttattttgcaccttatctgagaaagtaagtgtatttg |
17033363 |
T |
|
| Q |
308 |
atctt |
312 |
Q |
| |
|
||||| |
|
|
| T |
17033364 |
atctt |
17033368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 136 - 322
Target Start/End: Original strand, 45849670 - 45849856
Alignment:
| Q |
136 |
ggaacgcctctgtactcaattgagaaatattgatgtgtatggtttcgttgatccatttttcattcatgcagaaaatgaccaagaaagttctcagtcacat |
235 |
Q |
| |
|
||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||| |
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|
| T |
45849670 |
ggaacacctctatactcaattaggaaatagtgatgtgtatggtttcgttgatccatttttcattcacgcggaaaatgatcaagaaagttctcagtctcat |
45849769 |
T |
|
| Q |
236 |
atgaccgcaaagatgttctaggttaacaaagcttgttattttgcaccttacctgaaaaagttagtgtatttgatcttcatagtatta |
322 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
45849770 |
atgaccgcaaagatgtctgaggttaacaaagcttgttattttgcaccttacctgaaaaagtaagtgtatttgatcttcatagtatta |
45849856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 38 - 177
Target Start/End: Complemental strand, 21371404 - 21371266
Alignment:
| Q |
38 |
tttttgttcattcaaatgtcactttgccatgctgtttgtttgtttactgccttgtacatgttcagattttgaattgttttttaatattttaggtatatgg |
137 |
Q |
| |
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|||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
21371404 |
tttttgttcattcaaatg-cactttgccctgctgtttgtttgtttgctgccttgtacatgttcagattttgaattgttattgaatattttaggtatatgg |
21371306 |
T |
|
| Q |
138 |
aacgcctctgtactcaattgagaaatattgatgtgtatgg |
177 |
Q |
| |
|
|| ||||||||||||||||| |||||| |||||||||||| |
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|
| T |
21371305 |
aatgcctctgtactcaattgggaaatagtgatgtgtatgg |
21371266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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