View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16730_high_9 (Length: 319)
Name: NF16730_high_9
Description: NF16730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16730_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 18101144 - 18100859
Alignment:
| Q |
18 |
aatcccaaatatgcaaactagacctctccaacgaactttttggcggcgtcaacgatgcatgtggaaacaacctcgatcgaagccgctgttgtcccgtact |
117 |
Q |
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| T |
18101144 |
aatcccaaatatgcaaactagacctctccaacgaactctttggcggcgtcaacgatgcatgtggaaacaacctcgatcgaagccgctgttgtcccgtact |
18101045 |
T |
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| Q |
118 |
cacggcctggctcttcgcggctcatgcgcgaagagcattagagatttctcctccaccaccggaaaattcagtcgatcttccgatgatgccggatgattct |
217 |
Q |
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| T |
18101044 |
cgcggcctggctcttcgcggctcatgcgcgaagagcattagagatttctcctccaccacgggaaaattcagtcgatcttccgatgatgccggatgattct |
18100945 |
T |
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| Q |
218 |
cagaagtgtgttaactcccttcaagactcgcttcgcgaccggaacattataataccgacaccaaatgctagttgtgatgccatatt |
303 |
Q |
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| T |
18100944 |
cagaagtgtgttaactcccttcaagactcgcttcgcgaccggaacattataataccgacaccaaatgctagttgtgatgccatatt |
18100859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 37858752 - 37858467
Alignment:
| Q |
18 |
aatcccaaatatgcaaactagacctctccaacgaactttttggcggcgtcaacgatgcatgtggaaacaacctcgatcgaagccgctgttgtcccgtact |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37858752 |
aatcccaaatatgcaaactagacctctccaacgaactctttggcggcgtcaacgatgcatgtggaaacaacctcgatcgaagccgctgttgtcccgtact |
37858653 |
T |
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| Q |
118 |
cacggcctggctcttcgcggctcatgcgcgaagagcattagagatttctcctccaccaccggaaaattcagtcgatcttccgatgatgccggatgattct |
217 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37858652 |
cgcggcctggctcttcgcggctcatgcgcgaagagcattagagatttctcctccaccacgggaaaattcagtcgatcttccgatgatgccggatgattct |
37858553 |
T |
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| Q |
218 |
cagaagtgtgttaactcccttcaagactcgcttcgcgaccggaacattataataccgacaccaaatgctagttgtgatgccatatt |
303 |
Q |
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| T |
37858552 |
cagaagtgtgttaactcccttcaagactcgcttcgcgaccggaacattataataccgacaccaaatgctagttgtgatgccatatt |
37858467 |
T |
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