View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16730_low_10 (Length: 346)

Name: NF16730_low_10
Description: NF16730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16730_low_10
NF16730_low_10
[»] chr3 (17 HSPs)
chr3 (14-96)||(29414954-29415036)
chr3 (206-264)||(29412759-29412817)
chr3 (102-159)||(43112025-43112083)
chr3 (102-160)||(7248864-7248923)
chr3 (102-160)||(18142196-18142255)
chr3 (102-160)||(38343183-38343242)
chr3 (103-160)||(29184980-29185038)
chr3 (106-155)||(31173589-31173638)
chr3 (102-159)||(54566511-54566568)
chr3 (102-160)||(18140939-18140998)
chr3 (102-160)||(23539261-23539322)
chr3 (122-160)||(14826074-14826112)
chr3 (122-160)||(22256223-22256261)
chr3 (160-194)||(38344378-38344412)
chr3 (150-192)||(54567742-54567783)
chr3 (159-192)||(14824776-14824809)
chr3 (102-160)||(24729629-24729689)
[»] chr2 (9 HSPs)
chr2 (103-160)||(44242354-44242412)
chr2 (102-158)||(38528504-38528561)
chr2 (102-159)||(15749008-15749066)
chr2 (102-160)||(22468223-22468283)
chr2 (102-160)||(22474444-22474504)
chr2 (122-160)||(34831512-34831550)
chr2 (103-160)||(11830078-11830135)
chr2 (102-160)||(28462492-28462552)
chr2 (103-160)||(38935945-38936002)
[»] chr1 (11 HSPs)
chr1 (102-160)||(7780220-7780278)
chr1 (122-160)||(33934658-33934696)
chr1 (122-163)||(1825314-1825355)
chr1 (102-160)||(33667631-33667691)
chr1 (150-194)||(1826431-1826474)
chr1 (102-159)||(16785721-16785779)
chr1 (122-159)||(23322609-23322646)
chr1 (120-160)||(6607407-6607447)
chr1 (120-180)||(12277206-12277265)
chr1 (102-161)||(26097025-26097085)
chr1 (102-159)||(31645232-31645291)
[»] chr5 (12 HSPs)
chr5 (103-159)||(11890099-11890155)
chr5 (136-182)||(33847746-33847791)
chr5 (104-160)||(13948581-13948638)
chr5 (123-160)||(25453872-25453909)
chr5 (104-160)||(28819537-28819594)
chr5 (102-161)||(9751674-9751734)
chr5 (150-192)||(28820554-28820595)
chr5 (122-160)||(35599333-35599371)
chr5 (102-160)||(9750446-9750506)
chr5 (145-194)||(9751673-9751721)
chr5 (102-153)||(11439803-11439855)
chr5 (102-155)||(19599969-19600024)
[»] chr4 (9 HSPs)
chr4 (120-160)||(4432986-4433026)
chr4 (122-160)||(9136403-9136441)
chr4 (103-160)||(34027193-34027251)
chr4 (104-160)||(44199853-44199909)
chr4 (103-161)||(15694459-15694518)
chr4 (102-159)||(11862026-11862084)
chr4 (122-160)||(20962214-20962252)
chr4 (122-160)||(54555350-54555388)
chr4 (159-192)||(51162103-51162136)
[»] chr6 (9 HSPs)
chr6 (102-160)||(2741548-2741606)
chr6 (104-160)||(14327370-14327427)
chr6 (104-160)||(14420380-14420437)
chr6 (122-160)||(14328645-14328683)
chr6 (122-160)||(14421655-14421693)
chr6 (102-153)||(32614547-32614600)
chr6 (103-160)||(54807-54864)
chr6 (123-163)||(3062212-3062252)
chr6 (102-157)||(30409671-30409727)
[»] chr8 (8 HSPs)
chr8 (103-160)||(39808649-39808706)
chr8 (102-161)||(39515120-39515180)
chr8 (102-160)||(39513866-39513925)
chr8 (102-160)||(40702009-40702068)
chr8 (122-160)||(34901522-34901560)
chr8 (159-192)||(39683007-39683040)
chr8 (122-162)||(2270288-2270328)
chr8 (159-191)||(31985037-31985069)
[»] scaffold0725 (2 HSPs)
scaffold0725 (122-161)||(4954-4993)
scaffold0725 (150-194)||(4953-4996)
[»] scaffold0250 (1 HSPs)
scaffold0250 (122-161)||(11566-11605)
[»] chr7 (9 HSPs)
chr7 (159-194)||(47161753-47161788)
chr7 (122-160)||(1589406-1589444)
chr7 (150-192)||(5219035-5219076)
chr7 (102-161)||(48170260-48170317)
chr7 (102-160)||(5219035-5219095)
chr7 (120-160)||(9554258-9554298)
chr7 (103-160)||(17764698-17764757)
chr7 (159-191)||(21237345-21237377)
chr7 (102-146)||(31928661-31928705)
[»] scaffold0040 (1 HSPs)
scaffold0040 (122-160)||(66042-66080)
[»] scaffold0039 (1 HSPs)
scaffold0039 (122-160)||(110430-110468)
[»] scaffold0014 (1 HSPs)
scaffold0014 (159-191)||(227395-227427)


Alignment Details
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 29415036 - 29414954
Alignment:
Q  14 catcatagacacaaacacacactagtgccgcaaacaaaacaaattgacaaattcaaaatatagtaacatgatccatgaataat 96  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29415036 catcatacacacaaacacacactagtgccgcaaacaaaacaaattgacaaattcaaaatatagtaacatgattcatgaataat 29414954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 29412817 - 29412759
Alignment:
Q  206 tataaatgtaaattcttgaaaatgttaaccatagtaaattggaaaagatgattgaagta 264  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29412817 tataaatgtaaattcttgaaaatgttaactatagtaaattggaaaagatgattgaagta 29412759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 43112025 - 43112083
Alignment:
Q  102 agggttaacaggcctttac-tcctgtaatatatatcacttttggttttgccccctgtaa 159  Q
    |||||||| |||||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  43112025 agggttaataggcctttacctcctgtaatataaatcacttttggttttaccccctgtaa 43112083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 7248864 - 7248923
Alignment:
Q  102 agggttaacaggcctttactcc-tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||| |||||||||| || ||||||||| |||| ||||||||||||||||||||||    
T  7248864 agggttaataggcctttaccccctgtaatatagatcatttttggttttgccccctgtaaa 7248923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 18142255 - 18142196
Alignment:
Q  102 agggttaacaggcctttactcc-tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||| |||||||||| || |||||||||  ||||||||||||||||||||||||||    
T  18142255 agggttaataggcctttaccccctgtaatataggtcacttttggttttgccccctgtaaa 18142196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 38343183 - 38343242
Alignment:
Q  102 agggttaacaggcctttac-tcctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||| |||||||||| ||||||||||||| ||||||||| |||||||||| |||||    
T  38343183 agggttaataggcctttacctcctgtaatatatgtcacttttgattttgccccccgtaaa 38343242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 29185038 - 29184980
Alignment:
Q  103 gggttaacaggcctttactcc-tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    ||||||| ||||||||||||| |||||||||  ||||||||||||||||| ||||||||    
T  29185038 gggttaataggcctttactccctgtaatataggtcacttttggttttgcctcctgtaaa 29184980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 31173638 - 31173589
Alignment:
Q  106 ttaacaggcctttactcctgtaatatatatcacttttggttttgccccct 155  Q
    |||| ||| |||||| ||||||||||| ||||||||||||||||||||||    
T  31173638 ttaataggtctttacccctgtaatatagatcacttttggttttgccccct 31173589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 54566511 - 54566568
Alignment:
Q  102 agggttaacaggcctttactcctgtaatatatatcacttttggttttgccccctgtaa 159  Q
    |||||||| || ||||||| |||||||||||  ||||||||||||||| |||||||||    
T  54566511 agggttaatagacctttacccctgtaatataggtcacttttggttttgtcccctgtaa 54566568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 18140939 - 18140998
Alignment:
Q  102 agggttaacaggcctttactcc-tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||| |||||||||| || |||||||||  |||||||||||||||| |||||||||    
T  18140939 agggttaataggcctttaccccctgtaatataggtcacttttggttttgctccctgtaaa 18140998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 23539261 - 23539322
Alignment:
Q  102 agggttaacaggcctttactcc---tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||| |||||||||| ||   ||||||||| | |||||||||||||||||||||||||    
T  23539261 agggttaataggcctttaccccccctgtaatatacaccacttttggttttgccccctgtaaa 23539322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 14826112 - 14826074
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  14826112 cctgtaatatttgtcacttttggttttgccccctgtaaa 14826074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 22256223 - 22256261
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  22256223 cctgtaatatatgacacttttggttttgccccctgtaaa 22256261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 38344412 - 38344378
Alignment:
Q  160 atataggtcacttttgattttgccccctataaatt 194  Q
    |||||||||||||||||||||||||||| ||||||    
T  38344412 atataggtcacttttgattttgccccctgtaaatt 38344378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 54567783 - 54567742
Alignment:
Q  150 ccccctgtaaatataggtcacttttgattttgccccctataaa 192  Q
    |||||||||| ||||||||||||||| ||||||||||||||||    
T  54567783 ccccctgtaa-tataggtcacttttggttttgccccctataaa 54567742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 14824776 - 14824809
Alignment:
Q  159 aatataggtcacttttgattttgccccctataaa 192  Q
    ||||||||||||||||||||||||||||| ||||    
T  14824776 aatataggtcacttttgattttgccccctgtaaa 14824809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 24729689 - 24729629
Alignment:
Q  102 agggttaacaggcctttactcc--tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||| |||||||||||||  |||||||||  | ||||||||||||||| ||||||||    
T  24729689 agggttaataggcctttactcccctgtaatataggttacttttggttttgcctcctgtaaa 24729629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 44242412 - 44242354
Alignment:
Q  103 gggttaacaggcctttac-tcctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    ||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  44242412 gggttaataggcctttacctcctgtaatatagatcacttttggttttgccccctgtaaa 44242354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 38528504 - 38528561
Alignment:
Q  102 agggttaacaggcctttac-tcctgtaatatatatcacttttggttttgccccctgta 158  Q
    |||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  38528504 agggttaataggcctttacctcctgcaatatatatcacttttggttttgccccctgta 38528561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 15749066 - 15749008
Alignment:
Q  102 agggttaacaggccttta-ctcctgtaatatatatcacttttggttttgccccctgtaa 159  Q
    |||||||| |||| |||| | |||||||||||| |||||||||||||||||||||||||    
T  15749066 agggttaataggcttttatcccctgtaatatatgtcacttttggttttgccccctgtaa 15749008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 22468283 - 22468223
Alignment:
Q  102 agggttaacaggcctttactcc--tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||| |||||||||| ||  |||||||||  ||||||||||||||||||||||||||    
T  22468283 agggttaataggcctttacccccctgtaatataggtcacttttggttttgccccctgtaaa 22468223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 22474504 - 22474444
Alignment:
Q  102 agggttaacaggcctttactcc--tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||| |||||||||| ||  |||||||||  ||||||||||||||||||||||||||    
T  22474504 agggttaataggcctttacccccctgtaatataggtcacttttggttttgccccctgtaaa 22474444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 34831512 - 34831550
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  34831512 cctgtaatatatgtcatttttggttttgccccctgtaaa 34831550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 11830135 - 11830078
Alignment:
Q  103 gggttaacaggcctttactcctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    ||||||| |||| ||||| ||||||||||| ||||||||  |||||||||| ||||||    
T  11830135 gggttaataggcttttacccctgtaatatagatcactttgagttttgccccttgtaaa 11830078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 28462552 - 28462492
Alignment:
Q  102 agggttaacaggccttta--ctcctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||| |||||||||  | |||||||||||  |||||||||||||||| |||||||||    
T  28462552 agggttaataggcctttatccccctgtaatataggtcacttttggttttgcaccctgtaaa 28462492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 38935945 - 38936002
Alignment:
Q  103 gggttaacaggcctttactcctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    ||||||| ||| |||||| |||||||||||   ||||||||||||||||| |||||||    
T  38935945 gggttaataggtctttacccctgtaatataggacacttttggttttgcccactgtaaa 38936002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 7780278 - 7780220
Alignment:
Q  102 agggttaacaggcctttactcctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||| | |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  7780278 agggttaatatgcctttacccctgtaatatagatcacttttggttttgccccctgtaaa 7780220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 33934658 - 33934696
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  33934658 cctgtaatatagatcacttttggttttgccccctgtaaa 33934696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 1825314 - 1825355
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaatat 163  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  1825314 cctgtaatataggtcacttttggttttgccccctgtaaatat 1825355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 33667691 - 33667631
Alignment:
Q  102 agggttaacaggcctttactcc--tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||| |||||||||| ||  |||||||||  ||||||||||||||||||||||||||    
T  33667691 agggttaataggcctttacacccctgtaatataggtcacttttggttttgccccctgtaaa 33667631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 1826474 - 1826431
Alignment:
Q  150 ccccctgtaaatataggtcacttttgattttgccccctataaatt 194  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||    
T  1826474 ccccctgtaa-tataggtcacttttgattttgccccctgtaaatt 1826431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 16785721 - 16785779
Alignment:
Q  102 agggttaacaggcctttactcc-tgtaatatatatcacttttggttttgccccctgtaa 159  Q
    |||||||| |||||||||| || |||||| ||  |||||||||||||||||||||||||    
T  16785721 agggttaataggcctttaccccctgtaatgtaggtcacttttggttttgccccctgtaa 16785779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 23322646 - 23322609
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaa 159  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  23322646 cctgtaatatagagcacttttggttttgccccctgtaa 23322609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 6607447 - 6607407
Alignment:
Q  120 ctcctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||||||||| ||| |||||||||| |||||||||||    
T  6607447 ctcctgtaatatatgtcatttttggttttcccccctgtaaa 6607407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 12277206 - 12277265
Alignment:
Q  120 ctcctgtaatatatatcacttttggttttgccccctgtaaatataggtcacttttgatttt 180  Q
    |||||||||||||  ||| |||||||||| |||||||| ||||||||||| ||||| ||||    
T  12277206 ctcctgtaatataggtcatttttggttttcccccctgt-aatataggtcatttttggtttt 12277265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 26097085 - 26097025
Alignment:
Q  102 agggttaacaggcctttactcc-tgtaatatatatcacttttggttttgccccctgtaaat 161  Q
    |||||||| ||| |||||| || |||||||||  ||||||||||||||||| |||||||||    
T  26097085 agggttaataggtctttaccccctgtaatataggtcacttttggttttgcctcctgtaaat 26097025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 31645232 - 31645291
Alignment:
Q  102 agggttaacaggcctttactc--ctgtaatatatatcacttttggttttgccccctgtaa 159  Q
    |||||||| || |||||||||  ||||||||||  ||||||||| |||||||||||||||    
T  31645232 agggttaatagacctttactcatctgtaatataagtcacttttgattttgccccctgtaa 31645291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 11890155 - 11890099
Alignment:
Q  103 gggttaacaggcctttactcctgtaatatatatcacttttggttttgccccctgtaa 159  Q
    ||||||| |||||||||| |||||||||||  |||||||||||||||||||||||||    
T  11890155 gggttaataggcctttacccctgtaatataggtcacttttggttttgccccctgtaa 11890099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 33847791 - 33847746
Alignment:
Q  136 cacttttggttttgccccctgtaaatataggtcacttttgattttgc 182  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  33847791 cacttttggttttgccccctgt-aatatagggcacttttgattttgc 33847746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 13948638 - 13948581
Alignment:
Q  104 ggttaacaggcctttac-tcctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||| |||||||||| ||||||||||||   |||||||||||||||||||||||||    
T  13948638 ggttaataggcctttacctcctgtaatatagggcacttttggttttgccccctgtaaa 13948581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 25453909 - 25453872
Alignment:
Q  123 ctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  25453909 ctgtaatatatgtcacttttggttttgccccctgtaaa 25453872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 28819537 - 28819594
Alignment:
Q  104 ggttaacaggcctttactcc-tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||| |||||||||| || |||||||||  ||||||||||||||||||||||||||    
T  28819537 ggttaataggcctttaccccctgtaatataggtcacttttggttttgccccctgtaaa 28819594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 9751734 - 9751674
Alignment:
Q  102 agggttaacaggcctttactcc-tgtaatatatatcacttttggttttgccccctgtaaat 161  Q
    |||||||| |||| ||||| || |||||||||  |||||||||||||||||||||||||||    
T  9751734 agggttaataggcttttaccccctgtaatataggtcacttttggttttgccccctgtaaat 9751674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 28820595 - 28820554
Alignment:
Q  150 ccccctgtaaatataggtcacttttgattttgccccctataaa 192  Q
    |||||||||| ||||||||||||||||||||||||||| ||||    
T  28820595 ccccctgtaa-tataggtcacttttgattttgccccctgtaaa 28820554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 35599333 - 35599371
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  35599333 cctgtaatataggtcacttttggttttgccccctgtaaa 35599371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 9750446 - 9750506
Alignment:
Q  102 agggttaacaggcctttactcc--tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||| |||||||||| ||  |||||||||  ||||||||||||||| ||||||||||    
T  9750446 agggttaataggcctttacccccttgtaatataggtcacttttggttttgtcccctgtaaa 9750506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 9751721 - 9751673
Alignment:
Q  145 ttttgccccctgtaaatataggtcacttttgattttgccccctataaatt 194  Q
    |||| |||||||||| ||||||||||||||| ||||||||||| ||||||    
T  9751721 ttttaccccctgtaa-tataggtcacttttggttttgccccctgtaaatt 9751673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 11439855 - 11439803
Alignment:
Q  102 agggttaacaggccttta-ctcctgtaatatatatcacttttggttttgcccc 153  Q
    |||||||| ||| ||||| ||||||||||||| | ||||||||||||||||||    
T  11439855 agggttaataggtctttatctcctgtaatatagagcacttttggttttgcccc 11439803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 19599969 - 19600024
Alignment:
Q  102 agggttaacaggcctttactcc--tgtaatatatatcacttttggttttgccccct 155  Q
    |||||||| |||||||||| ||  |||||||||  |||||||||||||||||||||    
T  19599969 agggttaataggcctttacccccctgtaatataggtcacttttggttttgccccct 19600024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 4433026 - 4432986
Alignment:
Q  120 ctcctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  4433026 ctcctgtaatatagatcacttttggttttgccccctgtaaa 4432986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 9136441 - 9136403
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  9136441 cctgtaatatagatcacttttggttttgccccctgtaaa 9136403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 34027251 - 34027193
Alignment:
Q  103 gggttaacaggcctttactcc-tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    ||||||| |||||||||| || |||||||||  ||||||||||||||||||||||||||    
T  34027251 gggttaataggcctttaccccctgtaatataggtcacttttggttttgccccctgtaaa 34027193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 44199909 - 44199853
Alignment:
Q  104 ggttaacaggcctttactcctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||| |||||||||  | |||||||||  ||||||||||||||||||||||||||    
T  44199909 ggttaataggcctttatccttgtaatatacgtcacttttggttttgccccctgtaaa 44199853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 15694459 - 15694518
Alignment:
Q  103 gggttaacaggcctttactcc-tgtaatatatatcacttttggttttgccccctgtaaat 161  Q
    ||||||| |||||||||| || ||||||||| | |||||||||||||||||| |||||||    
T  15694459 gggttaataggcctttaccccctgtaatatacaccacttttggttttgccccttgtaaat 15694518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 11862084 - 11862026
Alignment:
Q  102 agggttaacaggcctttactcct-gtaatatatatcacttttggttttgccccctgtaa 159  Q
    |||||||| |||||||||| | | |||||||| | ||||||||||||||||||||||||    
T  11862084 agggttaataggcctttaccctttgtaatatagaacacttttggttttgccccctgtaa 11862026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 20962214 - 20962252
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  20962214 cctgtaatatatggcacttttggttttgccccctgtaaa 20962252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 54555388 - 54555350
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  54555388 cctgtaatatatggcacttttggttttgccccctgtaaa 54555350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 51162103 - 51162136
Alignment:
Q  159 aatataggtcacttttgattttgccccctataaa 192  Q
    ||||||||||||||||||||||||||||| ||||    
T  51162103 aatataggtcacttttgattttgccccctctaaa 51162136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 2741548 - 2741606
Alignment:
Q  102 agggttaacaggcctttactcctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||| | || ||||| ||| ||||||| |||||||||||||||||||||||||||    
T  2741548 agggttaatatgcatttacccctttaatatagatcacttttggttttgccccctgtaaa 2741606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 14327370 - 14327427
Alignment:
Q  104 ggttaacaggcctttactcc-tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||| |||||||||| || |||||||||  ||||||||||||||||||||||||||    
T  14327370 ggttaataggcctttaccccctgtaatatacgtcacttttggttttgccccctgtaaa 14327427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 14420380 - 14420437
Alignment:
Q  104 ggttaacaggcctttactcc-tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||| |||||||||| || |||||||||  ||||||||||||||||||||||||||    
T  14420380 ggttaataggcctttaccccctgtaatatacgtcacttttggttttgccccctgtaaa 14420437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 14328683 - 14328645
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  14328683 cctgtaatataggtcacttttggttttgccccctgtaaa 14328645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 14421693 - 14421655
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  14421693 cctgtaatataggtcacttttggttttgccccctgtaaa 14421655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 32614600 - 32614547
Alignment:
Q  102 agggttaacaggcctttactcc--tgtaatatatatcacttttggttttgcccc 153  Q
    |||||||| |||||||||| ||  |||||||||| |||||||||||||||||||    
T  32614600 agggttaataggcctttacacccctgtaatatatgtcacttttggttttgcccc 32614547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 54807 - 54864
Alignment:
Q  103 gggttaacaggcctttactcctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    ||||||| ||| |||| |||||||||||||   |||||||||||||| ||||||||||    
T  54807 gggttaataggtctttcctcctgtaatataggacacttttggttttgtcccctgtaaa 54864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 3062212 - 3062252
Alignment:
Q  123 ctgtaatatatatcacttttggttttgccccctgtaaatat 163  Q
    ||||||||||  |||||||||||||||||| ||||||||||    
T  3062212 ctgtaatataggtcacttttggttttgcccactgtaaatat 3062252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 30409727 - 30409671
Alignment:
Q  102 agggttaacaggcctttac-tcctgtaatatatatcacttttggttttgccccctgt 157  Q
    |||||||| |||||||||| ||||| ||||||  |||||||||||||| ||||||||    
T  30409727 agggttaataggcctttacctcctgcaatataggtcacttttggttttcccccctgt 30409671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 39808649 - 39808706
Alignment:
Q  103 gggttaacaggcctttactcctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    ||||||| ||| |||||| |||||||||||   |||||||||||||||||||||||||    
T  39808649 gggttaataggtctttacccctgtaatatagggcacttttggttttgccccctgtaaa 39808706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 39515180 - 39515120
Alignment:
Q  102 agggttaacaggcctttactcc-tgtaatatatatcacttttggttttgccccctgtaaat 161  Q
    |||||||| ||||||||||||| |||||||||  |||||||||||||  ||||||||||||    
T  39515180 agggttaataggcctttactccctgtaatataggtcacttttggtttgaccccctgtaaat 39515120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 39513866 - 39513925
Alignment:
Q  102 agggttaacaggcctttactcc-tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||| |||| ||||| || |||||||||  ||||||||||||||||||||||||||    
T  39513866 agggttaataggcatttaccccctgtaatataggtcacttttggttttgccccctgtaaa 39513925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 40702068 - 40702009
Alignment:
Q  102 agggttaacaggcctttactcc-tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||| |||||||||| || |||||||||  |||||||| |||||||||||||||||    
T  40702068 agggttaataggcctttaccccctgtaatataggtcacttttcgttttgccccctgtaaa 40702009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 34901522 - 34901560
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  34901522 cctgtaatataggtcacttttggttttgccccctgtaaa 34901560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 39683040 - 39683007
Alignment:
Q  159 aatataggtcacttttgattttgccccctataaa 192  Q
    |||||||| |||||||||||||||||||||||||    
T  39683040 aatatagggcacttttgattttgccccctataaa 39683007  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 2270328 - 2270288
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaata 162  Q
    |||||| ||||  ||||||||||||||||||||||||||||    
T  2270328 cctgtattataggtcacttttggttttgccccctgtaaata 2270288  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 31985037 - 31985069
Alignment:
Q  159 aatataggtcacttttgattttgccccctataa 191  Q
    ||||||||||||||||| |||||||||||||||    
T  31985037 aatataggtcacttttggttttgccccctataa 31985069  T

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Target: scaffold0725 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 4993 - 4954
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaat 161  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  4993 cctgtaatataggtcacttttggttttgccccctgtaaat 4954  T

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Target: scaffold0725; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 4996 - 4953
Alignment:
Q  150 ccccctgtaaatataggtcacttttgattttgccccctataaatt 194  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||||    
T  4996 ccccctgtaa-tataggtcacttttggttttgccccctgtaaatt 4953  T

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Target: scaffold0250 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 11605 - 11566
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaat 161  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  11605 cctgtaatatatagtacttttggttttgccccctgtaaat 11566  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 194
Target Start/End: Complemental strand, 47161788 - 47161753
Alignment:
Q  159 aatataggtcacttttgattttgccccctataaatt 194  Q
    ||||||||||||||||||||||||| ||||||||||    
T  47161788 aatataggtcacttttgattttgcctcctataaatt 47161753  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 1589406 - 1589444
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  1589406 cctgtaatataggtcacttttggttttgccccctgtaaa 1589444  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 5219076 - 5219035
Alignment:
Q  150 ccccctgtaaatataggtcacttttgattttgccccctataaa 192  Q
    |||||||||| ||||||||||||||||||||||||||| ||||    
T  5219076 ccccctgtaa-tataggtcacttttgattttgccccctgtaaa 5219035  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 48170317 - 48170260
Alignment:
Q  102 agggttaacaggcctttac-tcctgtaatatatatcacttttggttttgccccctgtaaat 161  Q
    |||||||| ||| |||||| ||||||||||||   ||||||||||||||||||||||||||    
T  48170317 agggttaagaggtctttacctcctgtaatata---cacttttggttttgccccctgtaaat 48170260  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 5219095 - 5219035
Alignment:
Q  102 agggttaacaggcctttactcc--tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||| |||||||||| ||  |||||||||  ||||||||| ||||||||||||||||    
T  5219095 agggttaataggcctttacccccctgtaatataggtcacttttgattttgccccctgtaaa 5219035  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 9554298 - 9554258
Alignment:
Q  120 ctcctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||||||||   |||||||||||||||||||||||||    
T  9554298 ctcctgtaatatagggcacttttggttttgccccctgtaaa 9554258  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 17764757 - 17764698
Alignment:
Q  103 gggttaacaggcctttactcc--tgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    ||||||| ||| |||||||||  |||||||||   |||||||||||||||||||||||||    
T  17764757 gggttaataggtctttactccactgtaatatagggcacttttggttttgccccctgtaaa 17764698  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 21237377 - 21237345
Alignment:
Q  159 aatataggtcacttttgattttgccccctataa 191  Q
    ||||||||||||||||| |||||||||||||||    
T  21237377 aatataggtcacttttggttttgccccctataa 21237345  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 31928705 - 31928661
Alignment:
Q  102 agggttaacaggcctttactcctgtaatatatatcacttttggtt 146  Q
    |||||||| |||||||||| |||||||||||  ||||||||||||    
T  31928705 agggttaataggcctttacccctgtaatataagtcacttttggtt 31928661  T

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Target: scaffold0040 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 66080 - 66042
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  66080 cctgtaatatatgacacttttggttttgccccctgtaaa 66042  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 110430 - 110468
Alignment:
Q  122 cctgtaatatatatcacttttggttttgccccctgtaaa 160  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  110430 cctgtaatatatgtcacttttggttttgctccctgtaaa 110468  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 227395 - 227427
Alignment:
Q  159 aatataggtcacttttgattttgccccctataa 191  Q
    ||||||||||||||||| |||||||||||||||    
T  227395 aatataggtcacttttggttttgccccctataa 227427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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