View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16730_low_14 (Length: 279)
Name: NF16730_low_14
Description: NF16730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16730_low_14 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 13228037 - 13227794
Alignment:
| Q |
15 |
aaaataccaaacattcctcgttatttatatttattcttaagcaagtctccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13228037 |
aaaataccaaacattcctcgttatttatatttattcttaagcaagtcccaaaaagtccttagttgagccatcatttctatttcgtctttcgtttcgatag |
13227938 |
T |
|
| Q |
115 |
atatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13227937 |
atatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagaccctgctc |
13227838 |
T |
|
| Q |
215 |
atggattaacgaaaatgtgcagaagctctatttgcctctgccat |
258 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13227837 |
atggattaacgaaaatgtgcaaaagctctatttgcctctgccat |
13227794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 134 - 258
Target Start/End: Original strand, 53883670 - 53883788
Alignment:
| Q |
134 |
ttctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatgtg |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
53883670 |
ttctttttctattgattcttttccaattat------ggatggatccatacataggtctatgtgtgtgtatagatcctgctcattgattaatgaaaatgtg |
53883763 |
T |
|
| Q |
234 |
cagaagctctatttgcctctgccat |
258 |
Q |
| |
|
|| ||| |||||||||||||||||| |
|
|
| T |
53883764 |
caaaagatctatttgcctctgccat |
53883788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 47522823 - 47522608
Alignment:
| Q |
15 |
aaaataccaaacattcctcgttatttatatttattcttaagcaagtctccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatag |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47522823 |
aaaataccaaacattcctggttatttatatttattcttaagcaagtccccaaaagtgtttagttgagccatcatttctatttcgtctttcgtttcgataa |
47522724 |
T |
|
| Q |
115 |
atatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
47522723 |
atatatcgattaattccgattctttttctatcgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtacatagatcctactc |
47522624 |
T |
|
| Q |
215 |
atggattaacgaaaat |
230 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
47522623 |
atggattaacgaaaat |
47522608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 42 - 258
Target Start/End: Complemental strand, 42680336 - 42680126
Alignment:
| Q |
42 |
tatttattcttaagcaagtctccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattcttttt |
141 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42680336 |
tatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctattttgtctttcgtttccatagatatatcgattaattccgattcttttt |
42680237 |
T |
|
| Q |
142 |
ctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatgtgcagaagct |
241 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
42680236 |
ctattgattcttttccaa------ttatgtatggatccatacataggtctacgtgtgtatatagatcctactcatggattaacgaaaatgtgcaaaagct |
42680143 |
T |
|
| Q |
242 |
ctatttgcctctgccat |
258 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
42680142 |
ctatttgcttctgccat |
42680126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 35934647 - 35934768
Alignment:
| Q |
42 |
tatttattcttaagcaagtctccaaaagt-gcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattctttt |
140 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
35934647 |
tatttattcttaagcaagtcctcaaaagttggttagttaagccatcaattctattt-gtctttcgtttcgatagatatatctattaattatgattatttt |
35934745 |
T |
|
| Q |
141 |
tctattgattcttttccaattat |
163 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
35934746 |
tctattgattcttttccaattat |
35934768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 192063 - 192007
Alignment:
| Q |
202 |
atagatcctgctcatggattaacgaaaatgtgcagaagctctatttgcctctgccat |
258 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
192063 |
atagattctgttcatggattaacgaaaatgtgcaagagctctatttgcctctgccat |
192007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University