View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16730_low_17 (Length: 250)
Name: NF16730_low_17
Description: NF16730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16730_low_17 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 34012636 - 34012391
Alignment:
| Q |
5 |
gagtgagatgaaagagttccatgatgaatgaagccaaaagaggagcgtttatgtttatgaatataaaactgcaaccaaatattccagagatgtaacatgt |
104 |
Q |
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| T |
34012636 |
gagttagaagaaagagttccatgatgaatgaagccaaaagaggagcgtttatgtttatgaatataaaactgcaaccaaatattccagagatgtaacatgt |
34012537 |
T |
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| Q |
105 |
ccgtcatgcaacggataacggtgacggtaactagaaaccaaccatctataaatagacacatacacgtgtcacttatagagattgcatagaagaaaagtgg |
204 |
Q |
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| T |
34012536 |
ccgtcatgcaacggataacggtgacggtaactagaaaccaaccatctataaatagacacatacacgtgtcacttatagagattgcatagaagaaaagtgg |
34012437 |
T |
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| Q |
205 |
gtccacaaataaccccattgcacacaccaaaagaaatactctattc |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34012436 |
gtccacaaataaccccattgcacacaccaaaagaaatactctattc |
34012391 |
T |
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