View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16730_low_3 (Length: 509)

Name: NF16730_low_3
Description: NF16730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16730_low_3
NF16730_low_3
[»] chr1 (8 HSPs)
chr1 (1-252)||(48506493-48506741)
chr1 (371-446)||(6165518-6165593)
chr1 (368-445)||(46545099-46545176)
chr1 (350-445)||(2620001-2620096)
chr1 (373-429)||(19025094-19025150)
chr1 (350-414)||(13120230-13120294)
chr1 (447-491)||(31141976-31142020)
chr1 (398-445)||(25080316-25080363)
[»] chr2 (5 HSPs)
chr2 (49-337)||(40927230-40927497)
chr2 (189-445)||(9612443-9612700)
chr2 (350-445)||(37440439-37440534)
chr2 (369-445)||(27410110-27410186)
chr2 (447-491)||(32271372-32271416)
[»] chr7 (13 HSPs)
chr7 (350-445)||(21496766-21496861)
chr7 (371-445)||(15964181-15964255)
chr7 (369-445)||(29915717-29915793)
chr7 (382-445)||(21688780-21688843)
chr7 (447-491)||(32089293-32089337)
chr7 (447-491)||(32096766-32096810)
chr7 (447-491)||(39128520-39128564)
chr7 (447-491)||(39478481-39478525)
chr7 (447-491)||(41706657-41706701)
chr7 (447-491)||(41812185-41812229)
chr7 (264-337)||(29915610-29915683)
chr7 (447-491)||(32087938-32087982)
chr7 (447-491)||(32093050-32093094)
[»] chr6 (6 HSPs)
chr6 (371-445)||(32089838-32089912)
chr6 (263-445)||(31393192-31393376)
chr6 (350-445)||(31895014-31895109)
chr6 (370-444)||(21279682-21279756)
chr6 (369-420)||(31202372-31202423)
chr6 (447-491)||(26217262-26217306)
[»] scaffold0259 (1 HSPs)
scaffold0259 (350-445)||(7182-7277)
[»] chr4 (12 HSPs)
chr4 (350-445)||(29515257-29515352)
chr4 (384-445)||(17523412-17523473)
chr4 (372-445)||(52627366-52627439)
chr4 (355-445)||(4986334-4986424)
chr4 (350-445)||(26095287-26095378)
chr4 (369-445)||(31978536-31978612)
chr4 (365-436)||(11907430-11907501)
chr4 (382-445)||(36892236-36892299)
chr4 (394-445)||(1937838-1937889)
chr4 (394-445)||(4889926-4889977)
chr4 (367-445)||(18196263-18196341)
chr4 (271-337)||(31978646-31978712)
[»] chr3 (7 HSPs)
chr3 (263-445)||(41073340-41073523)
chr3 (382-445)||(35092200-35092263)
chr3 (373-425)||(11193429-11193481)
chr3 (447-491)||(38044549-38044593)
chr3 (447-491)||(48838011-48838055)
chr3 (447-491)||(50152378-50152422)
chr3 (447-491)||(50904010-50904054)
[»] chr5 (3 HSPs)
chr5 (371-445)||(19288066-19288140)
chr5 (390-445)||(17528472-17528527)
chr5 (371-441)||(22962836-22962906)
[»] scaffold0169 (1 HSPs)
scaffold0169 (372-445)||(27481-27554)
[»] chr8 (6 HSPs)
chr8 (376-436)||(22014011-22014071)
chr8 (350-446)||(41378396-41378492)
chr8 (368-445)||(37095833-37095910)
chr8 (385-445)||(18887706-18887766)
chr8 (447-491)||(21634834-21634878)
chr8 (371-414)||(6731781-6731824)
[»] scaffold0002 (1 HSPs)
scaffold0002 (367-445)||(284705-284783)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 48506493 - 48506741
Alignment:
Q  1 cttgaactaataattggatactggcggaattaaagaatcaccggcggatgtgttttttgaaatactgtcggaattagtgaattactagcggattctaaat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  48506493 cttgaactaataattgggtactggcggaattaaagaatcaccggcggatgtgttttttgaaataccgtcggaattagtgaattactagcggattcttaat 48506592  T
Q  101 tcataggattactggcagattttaatgggtactggcggattgtttattttattactaacagatttcatccgccaataatacgatgccatgtgcagctgtc 200  Q
    ||| | |||||||||| || ||||||||||||||||| ||||||||  |||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  48506593 tcaca-gattactggccgactttaatgggtactggcgaattgttta--ttattactgacagatttcatccgccagtaatacgatgccatgtgcagctgtc 48506689  T
Q  201 atgcaccatcattattgacggaaatgatccgttagtgatgcaagggagattt 252  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| |||||||    
T  48506690 atgcaccatcattattgacggaaatgatccgtcagtgatgtaagagagattt 48506741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 371 - 446
Target Start/End: Original strand, 6165518 - 6165593
Alignment:
Q  371 cagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagtt 446  Q
    |||||||||| ||||| |||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  6165518 cagtaattactgagggcctaaatccctcagtgatgcaattttgaattggttagtaatttggagaattcttgtagtt 6165593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 368 - 445
Target Start/End: Complemental strand, 46545176 - 46545099
Alignment:
Q  368 cgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||  |||||||||||||    
T  46545176 cgccagtaaatacagagggtctaaatccctcagtaatgcaattttgaattggttagtaaattgaggaattcttgtagt 46545099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 350 - 445
Target Start/End: Complemental strand, 2620096 - 2620001
Alignment:
Q  350 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||| |||||| || || ||||||||||||| |||||||||||||||||| ||||||||| |||  ||||||| ||  |||| |||||||||||||    
T  2620096 gttattgaaggtttattccgccagtaattactgagggtctaaatccctcaataatgcaatattggattggttagtatattggggaattcttgtagt 2620001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 373 - 429
Target Start/End: Complemental strand, 19025150 - 19025094
Alignment:
Q  373 gtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataattt 429  Q
    |||||||  |||| |||||||||||||||||||||||||||||||||||| ||||||    
T  19025150 gtaattattgaggatctaaatccctcagtaatgcaattttgagttggttagtaattt 19025094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 414
Target Start/End: Complemental strand, 13120294 - 13120230
Alignment:
Q  350 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttga 414  Q
    |||| |||||| || || ||||||||||||| ||||||||||||||||||   ||||||||||||    
T  13120294 gttattgaaggtttattccgccagtaattactgagggtctaaatccctcatgtatgcaattttga 13120230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 31142020 - 31141976
Alignment:
Q  447 attggaacgatatagagaagattatcatggcccctacgcaaggat 491  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||    
T  31142020 attggaacgatacagagaagattagcatggcccctgcgcaaggat 31141976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 445
Target Start/End: Original strand, 25080316 - 25080363
Alignment:
Q  398 cagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    ||||||||||||||||  ||||||| ||||||||||| ||||||||||    
T  25080316 cagtaatgcaattttggattggttagtaatttggagacttcttgtagt 25080363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 175; Significance: 5e-94; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 49 - 337
Target Start/End: Complemental strand, 40927497 - 40927230
Alignment:
Q  49 tgtgttttttgaaatactgtcggaattagtgaattactagcggattctaaattcataggattactggcagattttaatgggtactggcggattgtttatt 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||| ||||||||||||||||||||||||||||    
T  40927497 tgtgttttttgaaatactgtcggaattagtgaattactagcggattctaaattcat----------gcagactttaatgggtactggcggattgtttatt 40927408  T
Q  149 ttattactaacagatttcatccgccaataatacgatgccatgtgcagctgtcatgcaccatcattattgacggaaatgatccgttagtgatgcaagggag 248  Q
      | |||| |||||||||||         |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  40927407 --actactgacagatttcat---------atacgatgccatgtgcagctgttatgcaccatcattattgacggaaatgatccgtcagtaatgcaagggag 40927319  T
Q  249 atttgtcaaagactttactgaaggatttatccgtcaataacataattatctgtattatcgagggattattccgtcaataatgttattga 337  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||    
T  40927318 atttgtcaaagactttactgaaggatttatccgtcaataacgtaattatctgtattatcgaaggattatttcgtcaataatgttattga 40927230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 189 - 445
Target Start/End: Complemental strand, 9612700 - 9612443
Alignment:
Q  189 tgtgcagctgtcatgcaccatcattattgacggaaatgatccgttagtgatgcaagggagatttgtcaaagactttactgaaggatttatccgtcaataa 288  Q
    |||||||||||| | ||||||||||||||||||||   |||||| ||| |  ||||||||||| ||||| ||||||||||  |||||||||||||| |||    
T  9612700 tgtgcagctgtcctacaccatcattattgacggaacaaatccgtcagtaacacaagggagattcgtcaatgactttactggcggatttatccgtcagtaa 9612601  T
Q  289 cataattatctgtattatcgagggattattccgtcaataatgttattgaagg-cnnnnnnnggttagtgaaggcttttttcgccagtaattacagagggt 387  Q
    || | ||||||||| ||| ||||| ||||||||||| |||||||||||| ||         | ||| |||||||||| | || |||||||||| || |||    
T  9612600 cagatttatctgtactattgagggtttattccgtcagtaatgttattgagggatttttcttgtttattgaaggctttctccgtcagtaattactgacggt 9612501  T
Q  388 ctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
     ||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||    
T  9612500 ttaaatccctcactaatgcaattttaaattggttagtaatttggagaattcttgtagt 9612443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 350 - 445
Target Start/End: Complemental strand, 37440534 - 37440439
Alignment:
Q  350 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||| |||||| || || || |||||||||| |||||||||||||||| |||||||||||||||| ||||||| ||| |||  |||||||||||||    
T  37440534 gttactgaaggtttattccgtcagtaattaccgagggtctaaatccctaagtaatgcaattttgaattggttagtaaattgaggaattcttgtagt 37440439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 445
Target Start/End: Original strand, 27410110 - 27410186
Alignment:
Q  369 gccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||| ||||||| | ||||   | |||||||||||||    
T  27410110 gccagtaattactgagggtctagatccctcagtaattcaattttaagttggtcactaataaagggaattcttgtagt 27410186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 32271416 - 32271372
Alignment:
Q  447 attggaacgatatagagaagattatcatggcccctacgcaaggat 491  Q
    |||||||||||| | |||||||||||||||||||| |||||||||    
T  32271416 attggaacgatacaaagaagattatcatggcccctgcgcaaggat 32271372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 350 - 445
Target Start/End: Original strand, 21496766 - 21496861
Alignment:
Q  350 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||| |||||| || || ||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  21496766 gttattgaaggtttattccgccagtaattattgagggtctaaatccctcagtaatgcaattttgagttggttactaatttagagaattcttgtagt 21496861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 445
Target Start/End: Complemental strand, 15964255 - 15964181
Alignment:
Q  371 cagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||||||||  |||||||||||||||| |||||||||||||||| ||||||| ||| |||| |||||||||||||    
T  15964255 cagtaattaatgagggtctaaatccctaagtaatgcaattttgaattggttagtaaattggggaattcttgtagt 15964181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 445
Target Start/End: Original strand, 29915717 - 29915793
Alignment:
Q  369 gccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||| ||||||| | ||||   | |||||||||||||    
T  29915717 gccagtaattactgagggtctagatccctcagtaattcaattttaagttggtcactaataaagggaattcttgtagt 29915793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 382 - 445
Target Start/End: Original strand, 21688780 - 21688843
Alignment:
Q  382 gagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||||| ||||| |||||||||||||||||||| ||||||| |||||||   ||||||||||||    
T  21688780 gagggtttaaatgcctcagtaatgcaattttgaattggttagtaatttgagaaattcttgtagt 21688843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 32089337 - 32089293
Alignment:
Q  447 attggaacgatatagagaagattatcatggcccctacgcaaggat 491  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||    
T  32089337 attggaacgatacagagaagattagcatggcccctgcgcaaggat 32089293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 32096810 - 32096766
Alignment:
Q  447 attggaacgatatagagaagattatcatggcccctacgcaaggat 491  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||    
T  32096810 attggaacgatacagagaagattagcatggcccctgcgcaaggat 32096766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 39128564 - 39128520
Alignment:
Q  447 attggaacgatatagagaagattatcatggcccctacgcaaggat 491  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||    
T  39128564 attggaacgatacagagaagattagcatggcccctgcgcaaggat 39128520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 39478481 - 39478525
Alignment:
Q  447 attggaacgatatagagaagattatcatggcccctacgcaaggat 491  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||    
T  39478481 attggaacgatacagagaagattagcatggcccctgcgcaaggat 39478525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 41706701 - 41706657
Alignment:
Q  447 attggaacgatatagagaagattatcatggcccctacgcaaggat 491  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||    
T  41706701 attggaacgatacagagaagattagcatggcccctgcgcaaggat 41706657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 41812185 - 41812229
Alignment:
Q  447 attggaacgatatagagaagattatcatggcccctacgcaaggat 491  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||    
T  41812185 attggaacgatacagagaagattagcatggcccctgcgcaaggat 41812229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 29915610 - 29915683
Alignment:
Q  264 tactgaaggatttatccgtcaataacataattatctgtattatcgagggattattccgtcaataatgttattga 337  Q
    |||||| |||||||||||||| |||  |||| | ||  ||||| ||||| ||||||||||| ||||||||||||    
T  29915610 tactgatggatttatccgtcagtaatgtaatcaactaaattattgagggtttattccgtcagtaatgttattga 29915683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 32087982 - 32087938
Alignment:
Q  447 attggaacgatatagagaagattatcatggcccctacgcaaggat 491  Q
    |||||||||||| ||||||||||| |||||||||| | |||||||    
T  32087982 attggaacgatacagagaagattaacatggcccctgcacaaggat 32087938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 32093094 - 32093050
Alignment:
Q  447 attggaacgatatagagaagattatcatggcccctacgcaaggat 491  Q
    |||||||||||| ||||||||||| ||||||||||  ||||||||    
T  32093094 attggaacgatacagagaagattagcatggcccctgtgcaaggat 32093050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 371 - 445
Target Start/End: Complemental strand, 32089912 - 32089838
Alignment:
Q  371 cagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    ||||||| || |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32089912 cagtaatcactgaggatctaaatccctcagtaatgcaattttgagttggttagtaatttggagaattcttgtagt 32089838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 263 - 445
Target Start/End: Original strand, 31393192 - 31393376
Alignment:
Q  263 ttactgaaggatttatccgtcaataacataattatctgtattatcgagggattattccgtcaataatgttattgaaggcnnnnnnng--gttagtgaagg 360  Q
    ||||||| |||||||||||||| |||  ||| | |||| ||||| |||||||| |||||||| ||| ||||||| |||           |||| ||||||    
T  31393192 ttactgacggatttatccgtcagtaatgtaactctctgaattattgagggattgttccgtcagtaacgttattgtagggttttttgaatgttattgaagg 31393291  T
Q  361 cttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
     || || ||||||||||||| |||||||||||||||||||||||||||| |||  ||||||| ||  |||| |||||||||||||    
T  31393292 tttattccgccagtaattactgagggtctaaatccctcagtaatgcaatattggattggttagtatattggggaattcttgtagt 31393376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 350 - 445
Target Start/End: Complemental strand, 31895109 - 31895014
Alignment:
Q  350 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||| |||||| || || || |||||||||| |||||||||||||||||| |||||||||||||| ||||||  ||| |||  |||||||||||||    
T  31895109 gttactgaagggttattccgtcagtaattactgagggtctaaatccctcaataatgcaattttgaattggttggtaaattgatgaattcttgtagt 31895014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 21279682 - 21279756
Alignment:
Q  370 ccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtag 444  Q
    ||||||||||| |||||||||||||||||||||||| |||||||| ||| ||| ||| || | ||||||||||||    
T  21279682 ccagtaattactgagggtctaaatccctcagtaatgtaattttgaattgattagtaaatttgggaattcttgtag 21279756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 31202423 - 31202372
Alignment:
Q  369 gccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggt 420  Q
    ||||||||||||  ||||||||||||| |||||||||||||||||| |||||    
T  31202423 gccagtaattactaagggtctaaatccgtcagtaatgcaattttgatttggt 31202372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 26217306 - 26217262
Alignment:
Q  447 attggaacgatatagagaagattatcatggcccctacgcaaggat 491  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||    
T  26217306 attggaacgatacagagaagattagcatggcccctgcgcaaggat 26217262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 350 - 445
Target Start/End: Complemental strand, 7277 - 7182
Alignment:
Q  350 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||| |||||| || || ||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||  |||| |||||||||||||    
T  7277 gttattgaaggtttattccgccagtaattactgagagtctaaatccctcagtaatgcaattttgaattggttaatatattggggaattcttgtagt 7182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 350 - 445
Target Start/End: Original strand, 29515257 - 29515352
Alignment:
Q  350 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||| |||||| || || ||||||||||||| |||||||||||||||||||||||| |||||||| ||||||| ||| |||  |||||||||||||    
T  29515257 gttattgaaggtttattccgccagtaattactgagggtctaaatccctcagtaatgtaattttgaattggttagtaaattgaggaattcttgtagt 29515352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 445
Target Start/End: Original strand, 17523412 - 17523473
Alignment:
Q  384 gggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||||||||||||||||||||| |||||||| ||||||| |||||||  |||||||||||||    
T  17523412 gggtctaaatccctcagtaatgtaattttgatttggttagtaatttgaggaattcttgtagt 17523473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 445
Target Start/End: Complemental strand, 52627439 - 52627366
Alignment:
Q  372 agtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||| | || |||||||| ||||    
T  52627439 agtaattactgagggtctaaatccctcggtaatgcaattttgaattggttagtaaataggggaattcttatagt 52627366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 355 - 445
Target Start/End: Complemental strand, 4986424 - 4986334
Alignment:
Q  355 tgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||||| || || ||||||||||||   ||||||||||||||||| |||||  ||||||| ||||||| ||| |||| |||||||||||||    
T  4986424 tgaaggtttattccgccagtaattattaagggtctaaatccctcactaatgtcattttgaattggttagtaaattggggaattcttgtagt 4986334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 350 - 445
Target Start/End: Original strand, 26095287 - 26095378
Alignment:
Q  350 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||| |||||| || || ||| |||||||||||||||||||||||    |||||||||||||||| ||||||| ||  |||| |||||||||||||    
T  26095287 gttactgaaggtttattccgctagtaattacagagggtctaaatc----agtaatgcaattttgaattggttagtagattggggaattcttgtagt 26095378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 445
Target Start/End: Complemental strand, 31978612 - 31978536
Alignment:
Q  369 gccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||| ||||||| | ||||   | |||||||||||||    
T  31978612 gccagtaattactgagggtctagatccctcagtaattcaattttaagttggtcactaataaagggaattcttgtagt 31978536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 436
Target Start/End: Complemental strand, 11907501 - 11907430
Alignment:
Q  365 tttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaat 436  Q
    ||||| |||||||||| || ||||||||| | | |||||||||||||||| ||||||| |||||||| ||||    
T  11907501 tttcgtcagtaattactgatggtctaaattcttgagtaatgcaattttgaattggttagtaatttggggaat 11907430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 382 - 445
Target Start/End: Complemental strand, 36892299 - 36892236
Alignment:
Q  382 gagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||||||||||| ||||||||||| |||||||| |||||||  ||||||  |||||||||||||    
T  36892299 gagggtctaaattcctcagtaatgtaattttgatttggttagaaatttgaggaattcttgtagt 36892236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 445
Target Start/End: Original strand, 1937838 - 1937889
Alignment:
Q  394 ccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    ||||||||||||||||||| | ||||||| ||| |||| |||||||||||||    
T  1937838 ccctcagtaatgcaattttaaattggttagtaaattggggaattcttgtagt 1937889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 445
Target Start/End: Original strand, 4889926 - 4889977
Alignment:
Q  394 ccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||| |||||||||||||||| ||||||| ||| |||| |||||||||||||    
T  4889926 cccttagtaatgcaattttgaattggttagtaaattggggaattcttgtagt 4889977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 445
Target Start/End: Original strand, 18196263 - 18196341
Alignment:
Q  367 tcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||||| ||||||  ||||||  ||| || |||||||||||||||| | ||||||| |||||||  |||||||||||||    
T  18196263 tcgccaataattaatgagggttcaaacccgtcagtaatgcaattttcaattggttactaatttgatgaattcttgtagt 18196341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 337
Target Start/End: Complemental strand, 31978712 - 31978646
Alignment:
Q  271 ggatttatccgtcaataacataattatctgtattatcgagggattattccgtcaataatgttattga 337  Q
    |||||||||||||| |||  |||| | ||| ||||| ||||| ||||||||||| ||||||||||||    
T  31978712 ggatttatccgtcagtaatgtaatcaactgaattattgagggtttattccgtcagtaatgttattga 31978646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 445
Target Start/End: Complemental strand, 41073523 - 41073340
Alignment:
Q  263 ttactgaaggatttatccgtcaataacataattatctgtattatcgagggattattccgtcaataatgttattgaaggcnnnnnnng-gttagtgaaggc 361  Q
    ||||||| |||||||||||||| |||  ||| | |||| ||||| |||||||| |||||||| ||| |||||||| ||          |||| ||||||     
T  41073523 ttactgacggatttatccgtcagtaatgtaactctctgaattattgagggattgttccgtcagtaacgttattgagggttttttgaatgttattgaaggt 41073424  T
Q  362 ttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    || || ||||||||||||| ||||||||||||||| |||||||||||| |||  ||||||| ||  |||| |||||||||||||    
T  41073423 ttattccgccagtaattactgagggtctaaatcccacagtaatgcaatattggattggttagtatattggggaattcttgtagt 41073340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 445
Target Start/End: Original strand, 35092200 - 35092263
Alignment:
Q  382 gagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    ||||||||||||||||| ||||||||||||||| ||||||| ||| ||||  ||||||||||||    
T  35092200 gagggtctaaatccctcggtaatgcaattttgaattggttagtaaattgggaaattcttgtagt 35092263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 425
Target Start/End: Complemental strand, 11193481 - 11193429
Alignment:
Q  373 gtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaata 425  Q
    |||||||| ||||||||||||| ||| ||||| ||||||||| ||||||||||    
T  11193481 gtaattactgagggtctaaatctctcggtaatacaattttgaattggttaata 11193429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 38044593 - 38044549
Alignment:
Q  447 attggaacgatatagagaagattatcatggcccctacgcaaggat 491  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||    
T  38044593 attggaacgatacagagaagattagcatggcccctgcgcaaggat 38044549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 48838011 - 48838055
Alignment:
Q  447 attggaacgatatagagaagattatcatggcccctacgcaaggat 491  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||    
T  48838011 attggaacgatacagagaagattagcatggcccctgcgcaaggat 48838055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 50152378 - 50152422
Alignment:
Q  447 attggaacgatatagagaagattatcatggcccctacgcaaggat 491  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||    
T  50152378 attggaacgatacagagaagattagcatggcccctgcgcaaggat 50152422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 50904010 - 50904054
Alignment:
Q  447 attggaacgatatagagaagattatcatggcccctacgcaaggat 491  Q
    |||||||||||| ||||||||||| || ||||||| |||||||||    
T  50904010 attggaacgatacagagaagattagcaaggcccctgcgcaaggat 50904054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 371 - 445
Target Start/End: Original strand, 19288066 - 19288140
Alignment:
Q  371 cagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||||||||| |||||||||||||||||||||||| |||||||| ||| ||| ||| | |  |||||||||||||    
T  19288066 cagtaattactgagggtctaaatccctcagtaatgtaattttgaattgattagtaaatagaggaattcttgtagt 19288140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 445
Target Start/End: Original strand, 17528472 - 17528527
Alignment:
Q  390 aaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    ||||||||||||||||||||||||| ||||||| ||| |||| ||||||| |||||    
T  17528472 aaatccctcagtaatgcaattttgaattggttagtaaattggggaattctggtagt 17528527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 441
Target Start/End: Complemental strand, 22962906 - 22962836
Alignment:
Q  371 cagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttg 441  Q
    |||||||||  || ||| |||||| |||| |||||||||||||| || |||| ||||||||||||||||||    
T  22962906 cagtaattattgaaggtttaaatctctcattaatgcaattttgaattagttagtaatttggagaattcttg 22962836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 445
Target Start/End: Complemental strand, 27554 - 27481
Alignment:
Q  372 agtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    ||||||||| || ||||| ||| |||||||||||||||||||| ||||||| ||| | || |||||||||||||    
T  27554 agtaattactgatggtctgaattcctcagtaatgcaattttgaattggttagtaaataggggaattcttgtagt 27481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 22014071 - 22014011
Alignment:
Q  376 attacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaat 436  Q
    ||||| ||||| ||||||||||||||||| ||||||||| ||||||| |||||||| ||||    
T  22014071 attactgagggcctaaatccctcagtaattcaattttgaattggttagtaatttggggaat 22014011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 446
Target Start/End: Complemental strand, 41378492 - 41378396
Alignment:
Q  350 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagtt 446  Q
    |||| |||||| || || ||||||||||||  |||||||||||| ||| |||||| ||||||||| ||||||||||  |||  |||||||| |||||    
T  41378492 gttattgaaggtttattccgccagtaattattgagggtctaaattccttagtaatacaattttgaattggttaatatattgaggaattcttctagtt 41378396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 445
Target Start/End: Original strand, 37095833 - 37095910
Alignment:
Q  368 cgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    ||||||||||||| || || ||||||||| |||||||||||| |||| ||  || |||||| || |||||||||||||    
T  37095833 cgccagtaattactgaaggcctaaatcccccagtaatgcaatcttgaattccttgataattaggggaattcttgtagt 37095910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 445
Target Start/End: Original strand, 18887706 - 18887766
Alignment:
Q  385 ggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    ||||||||||||| |||||||||||||||| ||||||| ||| | ||  ||||||||||||    
T  18887706 ggtctaaatccctaagtaatgcaattttgaattggttagtaaatcgggaaattcttgtagt 18887766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 21634878 - 21634834
Alignment:
Q  447 attggaacgatatagagaagattatcatggcccctacgcaaggat 491  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||    
T  21634878 attggaacgatacagagaagattagcatggcccctgcgcaaggat 21634834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 414
Target Start/End: Original strand, 6731781 - 6731824
Alignment:
Q  371 cagtaattacagagggtctaaatccctcagtaatgcaattttga 414  Q
    |||||||||| |||||||||||||| ||||||||| ||||||||    
T  6731781 cagtaattactgagggtctaaatccgtcagtaatgtaattttga 6731824  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 445
Target Start/End: Complemental strand, 284783 - 284705
Alignment:
Q  367 tcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 445  Q
    |||||| ||||||  ||||||  ||| || |||||||||||||||| | ||||||| |||||||  |||||||||||||    
T  284783 tcgccaataattaatgagggttcaaacccgtcagtaatgcaattttcaattggttactaatttgatgaattcttgtagt 284705  T

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