View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16730_low_4 (Length: 494)
Name: NF16730_low_4
Description: NF16730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16730_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 2 - 475
Target Start/End: Original strand, 3467497 - 3467955
Alignment:
| Q |
2 |
caatgtaaattgttgaatgtctttaatcctttttcttgtctccaatgtaaattgttgtcaaaatttgattgtcgaaatatcatttctcttgtcatataca |
101 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3467497 |
caatgtaaattgttgaatgtctttaatcctttctcttgtcagcaatgtaaattgttgtcaaaat--------------atcatttctcttgtcatataca |
3467582 |
T |
|
| Q |
102 |
gtacacactccaaaaatggggaaaaatccttttctgaatatcatttgttttgaattcatataagnnnnnnntgataagtttaagctcaagttattgacag |
201 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
3467583 |
gtacacactccaaaaatggggtaaaatccttttctggatatcatttgttttgaattcacataagaaaaaa-tgataagtttaagctcaagttattgacag |
3467681 |
T |
|
| Q |
202 |
tgtcgtattcctaaagcaatctacctcaactttttcacattcgaaccagtcnnnnnnntcatcaacattatccctctccctcaaagaataaaaacaaaaa |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3467682 |
tgtcgtattcctaaagcaatctacctcaactttttcacattcgaaccagtcaaaaaaatcatcaacattatccctctccctcaaagaataaaaacaaaaa |
3467781 |
T |
|
| Q |
302 |
gtcacattacttgatagcaggtagatattgtgcacaaatgctgcacataatcgaatagaaaaaagaaaattggtttctttacccatttgagaacaaaaaa |
401 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3467782 |
gtcacattactagatagcaggtagatattgtgcacaaatgctgcacataatcgaatagaaaaaagaaaattggtttctttacccatttgagaacaaaaaa |
3467881 |
T |
|
| Q |
402 |
caaatcttgcttatgtaggcagaatatccgttttacctacatacatcacatgtgattcctcgagatgtgatagc |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
3467882 |
caaatcttgcttatgtaggcagaatatccgttttacctacatacatcacatgcgattccttgagatgtgatagc |
3467955 |
T |
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