View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16730_low_5 (Length: 437)
Name: NF16730_low_5
Description: NF16730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16730_low_5 |
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| [»] scaffold0229 (1 HSPs) |
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| [»] scaffold0245 (1 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 580 - 165
Alignment:
| Q |
18 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
481 |
T |
|
| Q |
118 |
actaaacatataatggtgatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
480 |
actaaacatataatggtgatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
381 |
T |
|
| Q |
218 |
aactcagcacaccttatagccatctgagcaaaccccatagcctcttcaactggccaatctgtcagtcttggatccaacatctcactaaatgttcccttct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
380 |
aactcagcacaccttatagccatctgagcaaaccccatagcctcttcaactggccaatctgtcagtcttggatccaacatctcactaaatgttcccttct |
281 |
T |
|
| Q |
318 |
caatagctctaccaacatgatgtgtcaatcccattggcggtcttgctgtcaaaatttgcaagaaaattat-cccaagtgagtaaatatcagatttcactc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
280 |
caatagctctaccaacatgatgtgtcaatcccattggtggtcttgctgtcaaaatttgcaagaaaattatccccaagtgagtaaatatcagatttcactc |
181 |
T |
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| Q |
417 |
ctaacattcctctctg |
432 |
Q |
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| T |
180 |
ccaacattcctgtctg |
165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 1274572 - 1274157
Alignment:
| Q |
18 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1274572 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
1274473 |
T |
|
| Q |
118 |
actaaacatataatggtgatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1274472 |
actaaacatataatggtgatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
1274373 |
T |
|
| Q |
218 |
aactcagcacaccttatagccatctgagcaaaccccatagcctcttcaactggccaatctgtcagtcttggatccaacatctcactaaatgttcccttct |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1274372 |
aactcagcacaccttatagccatctgagcaaaccccatagcctcttcaactggccaatctgtcagtcttggatccaacatctcactaaatgttcccttct |
1274273 |
T |
|
| Q |
318 |
caatagctctaccaacatgatgtgtcaatcccattggcggtcttgctgtcaaaatttgcaagaaaattat-cccaagtgagtaaatatcagatttcactc |
416 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1274272 |
caatagctctaccaacatgatgtgtcaatcccattggtggtcttgctgtcaaaatttgcaagaaaattatccccaagtgagtaaatatcagatttcactc |
1274173 |
T |
|
| Q |
417 |
ctaacattcctctctg |
432 |
Q |
| |
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| T |
1274172 |
ccaacattcctgtctg |
1274157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 246 - 1
Alignment:
| Q |
18 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
246 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
147 |
T |
|
| Q |
118 |
actaaacatataatggtgatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
146 |
actaaacatataatggtgatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
47 |
T |
|
| Q |
218 |
aactcagcacaccttatagccatctgagcaaaccccatagcctctt |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46 |
aactcagcacaccttatagccatctgagcaaaccccatagcctctt |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 268 - 427
Target Start/End: Original strand, 50439185 - 50439344
Alignment:
| Q |
268 |
tggccaatctgtcagtcttggatccaacatctcactaaatgttcccttctcaatagctctaccaacatgatgtgtcaatcccattggcggtcttgctgtc |
367 |
Q |
| |
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||||||||| |||| | | ||||||||||||||| |||||||||| |||||||||||||| |||| | ||||| ||| |||||||| | | |||||||| |
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| T |
50439185 |
tggccaatcagtcactgtaggatccaacatctcagtaaatgttcctttctcaatagctctgtcaacgttatgtgccaaacccattggtgattttgctgtc |
50439284 |
T |
|
| Q |
368 |
aaaatttgcaagaaaattatcccaagtgagtaaatatcagatttcactcctaacattcct |
427 |
Q |
| |
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|||||||| | |||||| || |||||||| || | ||| |||||||| |||||||||||| |
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|
| T |
50439285 |
aaaatttgaaggaaaatgattccaagtgaatatacatctgatttcacacctaacattcct |
50439344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 411
Target Start/End: Original strand, 35082868 - 35082971
Alignment:
| Q |
308 |
gttcccttctcaatagctctaccaacatgatgtgtcaatcccattggcggtcttgctgtcaaaatttgcaagaaaattatcccaagtgagtaaatatcag |
407 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| ||||| |||||||| ||| | || || | | ||| || | || || ||||||||||||||||||| |
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|
| T |
35082868 |
gttcccttttcaatagatctaccaacatgatgagtcaaacccattggaggtttggcggtaatcacttgtaaaagcatgattccaagtgagtaaatatcag |
35082967 |
T |
|
| Q |
408 |
attt |
411 |
Q |
| |
|
|||| |
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|
| T |
35082968 |
attt |
35082971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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