View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16730_low_8 (Length: 357)

Name: NF16730_low_8
Description: NF16730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16730_low_8
NF16730_low_8
[»] chr3 (11 HSPs)
chr3 (18-357)||(1447904-1448243)
chr3 (20-357)||(1425815-1426153)
chr3 (18-357)||(1470379-1470727)
chr3 (261-357)||(19757720-19757816)
chr3 (313-357)||(19736818-19736862)
chr3 (199-246)||(11581207-11581254)
chr3 (306-357)||(51448288-51448339)
chr3 (306-357)||(52138480-52138531)
chr3 (299-357)||(25191031-25191089)
chr3 (298-355)||(24302077-24302134)
chr3 (313-357)||(29817157-29817201)
[»] scaffold0024 (1 HSPs)
scaffold0024 (261-357)||(82373-82469)
[»] chr4 (11 HSPs)
chr4 (301-357)||(10775993-10776049)
chr4 (262-357)||(39754906-39755001)
chr4 (306-357)||(435881-435932)
chr4 (199-250)||(15183618-15183669)
chr4 (306-357)||(23906880-23906931)
chr4 (306-357)||(33226861-33226912)
chr4 (306-357)||(48174672-48174723)
chr4 (315-357)||(30807250-30807292)
chr4 (261-354)||(1211924-1212017)
chr4 (52-133)||(27991724-27991805)
chr4 (261-357)||(27450707-27450803)
[»] chr6 (5 HSPs)
chr6 (261-352)||(2689313-2689404)
chr6 (261-357)||(20428170-20428266)
chr6 (306-357)||(9706428-9706479)
chr6 (306-357)||(10100436-10100487)
chr6 (261-357)||(5631469-5631566)
[»] chr8 (12 HSPs)
chr8 (261-349)||(13984695-13984782)
chr8 (306-357)||(15215849-15215900)
chr8 (305-357)||(41444882-41444934)
chr8 (306-357)||(12492421-12492472)
chr8 (306-357)||(36565820-36565871)
chr8 (299-357)||(4033066-4033124)
chr8 (50-92)||(16252868-16252910)
chr8 (77-105)||(15853814-15853842)
chr8 (313-357)||(36544804-36544848)
chr8 (261-321)||(38667245-38667305)
chr8 (309-357)||(43732226-43732274)
chr8 (313-357)||(45332073-45332117)
[»] chr5 (12 HSPs)
chr5 (261-357)||(3394362-3394458)
chr5 (261-357)||(43558348-43558444)
chr5 (306-357)||(1274917-1274968)
chr5 (306-357)||(2076053-2076104)
chr5 (306-357)||(3301501-3301552)
chr5 (306-357)||(12492966-12493017)
chr5 (306-357)||(20318643-20318694)
chr5 (299-357)||(3096834-3096892)
chr5 (306-356)||(17341780-17341830)
chr5 (260-357)||(36200434-36200531)
chr5 (313-357)||(1288175-1288219)
chr5 (313-357)||(16347988-16348032)
[»] chr2 (8 HSPs)
chr2 (261-357)||(11992640-11992736)
chr2 (192-283)||(7292714-7292805)
chr2 (306-357)||(2610180-2610231)
chr2 (306-357)||(8180432-8180483)
chr2 (262-356)||(14769943-14770037)
chr2 (306-354)||(452201-452249)
chr2 (192-248)||(12904729-12904785)
chr2 (313-357)||(13148965-13149009)
[»] chr1 (10 HSPs)
chr1 (202-357)||(28528233-28528388)
chr1 (261-353)||(32066805-32066894)
chr1 (306-355)||(19936175-19936224)
chr1 (306-357)||(8671572-8671623)
chr1 (306-357)||(51601710-51601761)
chr1 (65-148)||(52442826-52442909)
chr1 (308-357)||(43240962-43241011)
chr1 (198-242)||(18793459-18793503)
chr1 (313-357)||(40419333-40419377)
chr1 (306-357)||(49347972-49348024)
[»] scaffold0113 (1 HSPs)
scaffold0113 (306-357)||(12177-12228)
[»] chr7 (5 HSPs)
chr7 (261-357)||(38606657-38606753)
chr7 (306-357)||(32630259-32630310)
chr7 (306-357)||(46356430-46356481)
chr7 (198-357)||(43793514-43793670)
chr7 (313-357)||(33350392-33350436)
[»] scaffold0570 (1 HSPs)
scaffold0570 (306-357)||(2849-2900)
[»] scaffold0171 (1 HSPs)
scaffold0171 (306-357)||(5844-5895)


Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 1447904 - 1448243
Alignment:
Q  18 agtattgtcccataaatttatgttcagttagctctaattttatcccctctaatcttactacacatccaacacaacttcttcatatctattatgcttaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1447904 agtattgtcccataaatttatgttcagttagctctaattttatcccctctagtcttactacacatccaacacaacttcttcatatctattatgcttaatt 1448003  T
Q  118 catgtttgtgttggttgtttaccaccaaacatcatcaattttattgatgttcgataaaaaattctttcaacacgtgagtagtactttcgcatcacataaa 217  Q
     |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  1448004 tatgtttgtgttggttgtttaccaccaaacatcatcagttttattgatgttcgataaaaatttatttcaacacgtgagtagtactttcgcatcacataaa 1448103  T
Q  218 acacacgagacattccttcatttcaaccacccatgcaaggtttgatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatt 317  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1448104 acacacgaggcattcctccatttcaaccacccatgcaaggtttgatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatt 1448203  T
Q  318 taaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  1448204 taaaccatgcaacttttgatatgatatgatctccaacttt 1448243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 1425815 - 1426153
Alignment:
Q  20 tattgtcccataaatttatgttca-gttagctctaattttatcccctctaatcttactacacatccaacacaacttcttcatatctattatgcttaattc 118  Q
    |||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| |||||||||||||| || ||||||||| |||||||||||     
T  1425815 tattgtcccataaatttatgttcatgttagctctaattctattccgtctaatcttactatacatccaacacaacgtcctcatatctactatgcttaattt 1425914  T
Q  119 atgtttgtgttggttgtttaccaccaaacatcatcaattttattgatgttcgat-aaaaaattctttcaacacgtgagtagtactttcgcatcacataaa 217  Q
    |||||| || ||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||  ||||||   ||||||||| |||||| |||    
T  1425915 atgtttttgctggttgtttaccaccaaacatcatcagctttattgatgttcgataaaaaaattctttca--acgtgaacggtactttcgaatcacacaaa 1426012  T
Q  218 acacacgagacattccttcatttcaaccacccatgca-aggtttgatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatat 316  Q
    ||||||||| ||||| |  | ||||||||||||| ||  ||||||||||||||||||||||| ||||| |||||||||||||  ||||||||||||||||    
T  1426013 acacacgaggcattcgtctagttcaaccacccatccatgggtttgatgatttacatctccttctatttatttgttgtttttctttataaacccaaaatat 1426112  T
Q  317 ttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  1426113 ttaaaccatacaacttttggtataatatgatctccaacttt 1426153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 1470379 - 1470727
Alignment:
Q  18 agtattgtcccataaatttatgttca-gttagctctaattttatcccctctaatcttactacacatccaacacaacttcttcatatctattatgcttaat 116  Q
    ||||||| |||||||||||||||||| ||||| ||||||| ||||   ||||  ||||| ||| | |||||||||||| |  || |||| ||||||||||    
T  1470379 agtattgccccataaatttatgttcatgttaggtctaattctatcatgtctagccttacaacatacccaacacaacttttgtatctctactatgcttaat 1470478  T
Q  117 tcatgtttgtgttggttgtttaccaccaaacatcatcaattttattgatgttcgataaaaaa-----------ttctttcaacacgtgagtagtactttc 205  Q
    | |||||||||||||||| ||||||||||||||| |   ||||| | |||||||||||||||           |||||||||   |||||| || ||||     
T  1470479 ttatgtttgtgttggttgcttaccaccaaacatcgttggttttactaatgttcgataaaaaaaaaaaaaaaaattctttcaat--gtgagtggtgcttt- 1470575  T
Q  206 gcatcacataaaacacacgagacattccttcatttcaaccacccatgcaaggtttgatgatttacatctccttttatttctttgttgtttttcactataa 305  Q
    ||||||||||||| |||| |||||||||| |||||| |||||||||  | ||||||||||||||||| ||||| ||||  ||||||||||||||||||||    
T  1470576 gcatcacataaaatacacaagacattcctccatttctaccacccatctagggtttgatgatttacatttccttctattcatttgttgtttttcactataa 1470675  T
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1470676 accaaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 1470727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 261 - 357
Target Start/End: Complemental strand, 19757816 - 19757720
Alignment:
Q  261 gatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||||||||||| || |||||||| |||| ||||  |||||  |||||| |||||||||||||| |||||  |||||||||||||||||||||||    
T  19757816 gatgatttacatctgctcttatttctctgttattttgtactatggacccaagatatttaaaccatgtaacttggggtatgatatgatctccaacttt 19757720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 19736862 - 19736818
Alignment:
Q  313 atatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||||||||||| |||||  |||||||||||||||||||||||    
T  19736862 atatttaaaccatgtaacttggggtatgatatgatctccaacttt 19736818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 11581254 - 11581207
Alignment:
Q  199 tactttcgcatcacataaaacacacgagacattccttcatttcaacca 246  Q
    |||||||| ||||||||||||||  ||||||||| |||||||||||||    
T  11581254 tactttcgaatcacataaaacacctgagacattcattcatttcaacca 11581207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 51448288 - 51448339
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  51448288 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 51448339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 52138531 - 52138480
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  52138531 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 52138480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 25191089 - 25191031
Alignment:
Q  299 actataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| |||||| ||||||||||| || |||||  | |||||||||||||||||||||    
T  25191089 actatagacccaagatatttaaaccgtgtaacttgggctatgatatgatctccaacttt 25191031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 24302077 - 24302134
Alignment:
Q  298 cactataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaact 355  Q
    |||||| || ||||||||||||||||||||||||  || ||||| |||||||| ||||    
T  24302077 cactatgaatccaaaatatttaaaccatgcaactcatgctatgacatgatctctaact 24302134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 29817201 - 29817157
Alignment:
Q  313 atatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| |||| || ||||| ||||||||||||||||||||||||    
T  29817201 atatttgaaccgtgtaacttatggtatgatatgatctccaacttt 29817157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 357
Target Start/End: Complemental strand, 82469 - 82373
Alignment:
Q  261 gatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||||||||||| ||| |||||||  ||  ||||| |||||  |||||| ||||||||||| || ||||| ||||||||||| ||||||||||||    
T  82469 gatgatttacatctgcttctatttctccgtcattttttactatggacccaagatatttaaaccgtgtaacttgtggtatgatataatctccaacttt 82373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 10775993 - 10776049
Alignment:
Q  301 tataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||| |||||| |||||||||||||| ||||| ||||||||||||||||||||||||    
T  10775993 tatagacccaagatatttaaaccatgtaacttgtggtatgatatgatctccaacttt 10776049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 357
Target Start/End: Original strand, 39754906 - 39755001
Alignment:
Q  262 atgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    ||||||||||||||||| ||||||||||| |||||  |||||| |||||  |||||||||   ||  |||| |||||||||||||||| |||||||    
T  39754906 atgatttacatctccttctatttctttgtcgttttgtactatagacccatgatatttaaagtgtgtgacttgtggtatgatatgatcttcaacttt 39755001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 435932 - 435881
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  435932 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 435881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 15183669 - 15183618
Alignment:
Q  199 tactttcgcatcacataaaacacacgagacattccttcatttcaaccaccca 250  Q
    |||||||||||||||||||||||  |||||| |||| ||| |||||||||||    
T  15183669 tactttcgcatcacataaaacacttgagacactcctccatctcaaccaccca 15183618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 23906880 - 23906931
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  23906880 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 23906931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 33226912 - 33226861
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  33226912 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 33226861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 48174672 - 48174723
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  48174672 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 48174723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 357
Target Start/End: Complemental strand, 30807292 - 30807250
Alignment:
Q  315 atttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    ||||||||| || ||||| ||||||||||||||||||||||||    
T  30807292 atttaaaccgtgtaacttgtggtatgatatgatctccaacttt 30807250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 354
Target Start/End: Original strand, 1211924 - 1212017
Alignment:
Q  261 gatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaac 354  Q
    ||||||||||| || ||| ||||||| |||| ||||  |||||  || ||| |||||||||| ||| ||| |  ||||||||||||||||||||    
T  1211924 gatgatttacacctgcttctatttctctgttattttgtactatggacacaagatatttaaactatgtaacgtaaggtatgatatgatctccaac 1212017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 27991724 - 27991805
Alignment:
Q  52 taattttatcccctctaatcttactacacatccaacacaacttcttcatatctattatgcttaattcatgtttgtgttggtt 133  Q
    ||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||  ||  |||| || ||||| |||||||||    
T  27991724 taattctatctcatctaatcttaccacacatccaacacaacatcttcatttctgctacacttattttatgttcgtgttggtt 27991805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 357
Target Start/End: Original strand, 27450707 - 27450803
Alignment:
Q  261 gatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||||||||||| ||| |||||||   |  |||| ||||||  |||||| |||| |||||  || |||||  |||||||||||||||||||||||    
T  27450707 gatgatttacatctgcttctatttctccatcattttgcactatggacccaagatatgtaaactgtgtaacttggggtatgatatgatctccaacttt 27450803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 2689404 - 2689313
Alignment:
Q  261 gatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctcca 352  Q
    ||||||||||||||  || |||||||  || |||||  |||||| |||||||||||||||||| || |||||  ||||||||||||||||||    
T  2689404 gatgatttacatctgattctatttctccgtcgttttgtactatagacccaaaatatttaaaccgtgtaacttagggtatgatatgatctcca 2689313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 357
Target Start/End: Original strand, 20428170 - 20428266
Alignment:
Q  261 gatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||||||||||| ||| ||||| |  || |||||  ||| |  |||||| |||||||||||  | ||||| ||||||||||||||||||||||||    
T  20428170 gatgatttacatctgcttctatttttccgtcgttttgtactgtggacccaatatatttaaaccgcgtaacttgtggtatgatatgatctccaacttt 20428266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 9706479 - 9706428
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  9706479 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 9706428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 10100436 - 10100487
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  10100436 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 10100487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 357
Target Start/End: Complemental strand, 5631566 - 5631469
Alignment:
Q  261 gatgatttacatctccttttatttctttgttgtttttcactataaaccc-aaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||||||||||| ||| |||||||  ||  ||||  |||||  |||| |||||||||||||| || |||||  |||||||||||||||| ||||||    
T  5631566 gatgatttacatctgcttctatttctccgtcattttgtactatggacccaaaaatatttaaaccgtgtaacttggggtatgatatgatctctaacttt 5631469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 349
Target Start/End: Complemental strand, 13984782 - 13984695
Alignment:
Q  261 gatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaaccatgcaacttttggtatgatatgatct 349  Q
    |||||||||||||| |||||||||||||||  ||||| |||||  |||||| ||||||||||| || | |||  |||||||||||||||    
T  13984782 gatgatttacatctgcttttatttctttgtcattttt-actatggacccaagatatttaaaccgtgtatcttggggtatgatatgatct 13984695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 15215849 - 15215900
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||| |||||||||||||||||||||||    
T  15215849 acccaatatatttaaaccgtgtaactttgggtatgatatgatctccaacttt 15215900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 41444882 - 41444934
Alignment:
Q  305 aacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    ||||||| |||||||||||| | ||||| ||||||||||||||||||| ||||    
T  41444882 aacccaagatatttaaaccaagtaacttgtggtatgatatgatctccaccttt 41444934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 12492421 - 12492472
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  12492421 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 12492472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 36565820 - 36565871
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  36565820 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 36565871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 4033066 - 4033124
Alignment:
Q  299 actataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    ||||| ||||||| ||| ||||||| || |||||  |||||||||||||||||||||||    
T  4033066 actatgaacccaagatacttaaaccgtgtaacttggggtatgatatgatctccaacttt 4033124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 16252910 - 16252868
Alignment:
Q  50 tctaattttatcccctctaatcttactacacatccaacacaac 92  Q
    |||||||||||| | ||||||||||| ||||||||||||||||    
T  16252910 tctaattttatctcatctaatcttaccacacatccaacacaac 16252868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 15853814 - 15853842
Alignment:
Q  77 acacatccaacacaacttcttcatatcta 105  Q
    |||||||||||||||||||||||||||||    
T  15853814 acacatccaacacaacttcttcatatcta 15853842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 36544848 - 36544804
Alignment:
Q  313 atatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    ||||||||||| || |||||  |||||||||||||||||||||||    
T  36544848 atatttaaaccttgtaacttggggtatgatatgatctccaacttt 36544804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 38667305 - 38667245
Alignment:
Q  261 gatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaa 321  Q
    |||||||||||||| ||||||||||| | | |||||  ||||| ||||||| |||||||||    
T  38667305 gatgatttacatcttcttttatttctctatcgttttgtactatgaacccaagatatttaaa 38667245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 43732226 - 43732274
Alignment:
Q  309 caaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    ||||||||||||||| ||  |||| || |||||||||||||||||||||    
T  43732226 caaaatatttaaaccgtgttacttgtgctatgatatgatctccaacttt 43732274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 45332073 - 45332117
Alignment:
Q  313 atatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||    
T  45332073 atatttaaaccgtgtaacttgtggtatgacatgatctccaacttt 45332117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 357
Target Start/End: Complemental strand, 3394458 - 3394362
Alignment:
Q  261 gatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||||||||||| ||| |||||||  ||  ||||  |||||  |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  3394458 gatgatttacatctgcttctatttctccgtcattttgtactatggacccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 3394362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 357
Target Start/End: Original strand, 43558348 - 43558444
Alignment:
Q  261 gatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||||||||||| ||| ||||||| ||| |||||  || ||  ||| || ||||||||| | || ||||| ||||||| ||||||||||||||||    
T  43558348 gatgatttacatctgcttctatttctctgtggttttgtacaatggacctaagatatttaaatcgtgtaacttgtggtatgctatgatctccaacttt 43558444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 1274968 - 1274917
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  1274968 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 1274917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 2076053 - 2076104
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  2076053 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 2076104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 3301552 - 3301501
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  3301552 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 3301501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 12492966 - 12493017
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  12492966 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 12493017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 20318694 - 20318643
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  20318694 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 20318643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 3096892 - 3096834
Alignment:
Q  299 actataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    ||||||||||||| |||||||||||||| ||||| || |  ||||||||||| ||||||    
T  3096892 actataaacccaagatatttaaaccatgtaacttgtgctgagatatgatctctaacttt 3096834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 17341780 - 17341830
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaactt 356  Q
    |||||| |||||||||||||| || ||  ||||||||||||||||||||||    
T  17341780 acccaatatatttaaaccatgtaatttcaggtatgatatgatctccaactt 17341830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 357
Target Start/End: Complemental strand, 36200531 - 36200434
Alignment:
Q  260 tgatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    ||||||||||||| | ||  ||||||| |||  ||||  ||||| ||||||||||||||||||  || |||||  |||||||||||| |||| |||||    
T  36200531 tgatgatttacatatgctactatttctatgtcattttgtactatgaacccaaaatatttaaacggtgtaacttgaggtatgatatgacctcccacttt 36200434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 1288175 - 1288219
Alignment:
Q  313 atatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    ||||||||||| || |||||  |||||||||||||||||||||||    
T  1288175 atatttaaaccgtgtaacttggggtatgatatgatctccaacttt 1288219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 16347988 - 16348032
Alignment:
Q  313 atatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    ||||||||||| || |||||  |||||||||||||||||||||||    
T  16347988 atatttaaaccgtgtaacttggggtatgatatgatctccaacttt 16348032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 357
Target Start/End: Original strand, 11992640 - 11992736
Alignment:
Q  261 gatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||||||||||| ||| |||||||   |  ||||  |||||| |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  11992640 gatgatttacatctgcttctatttctccatcattttgtactatagacccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 11992736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 283
Target Start/End: Complemental strand, 7292805 - 7292714
Alignment:
Q  192 tgagtagtactttcgcatcacataaaacacacgagacattccttcatttcaaccacccatgcaaggtttgatgatttacatctccttttatt 283  Q
    |||| ||||||||||||||| |||||||||  ||| || ||||||||||||||||||||     | ||||||| ||||||||||||| ||||    
T  7292805 tgagcagtactttcgcatcatataaaacacctgagtcactccttcatttcaaccacccaacttggatttgatggtttacatctccttctatt 7292714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 2610231 - 2610180
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  2610231 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 2610180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 8180483 - 8180432
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||||||||||||||| || |||||   ||||||||||||||||||||||    
T  8180483 acccaaaatatttaaaccgtgtaacttggagtatgatatgatctccaacttt 8180432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 356
Target Start/End: Complemental strand, 14770037 - 14769943
Alignment:
Q  262 atgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaactt 356  Q
    ||||||||||| | |||  |||||| |||||||||  |||||   || || ||||||||||| || ||||| || ||||||||||||||||||||    
T  14770037 atgatttacatatgcttgaatttctctgttgttttgtactatggccctaagatatttaaaccgtgtaacttatgctatgatatgatctccaactt 14769943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 452201 - 452249
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaac 354  Q
    |||||| ||||||||||| || |||||  ||||||||||||||||||||    
T  452201 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaac 452249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 12904785 - 12904729
Alignment:
Q  192 tgagtagtactttcgcatcacataaaacacacgagacattccttcatttcaaccacc 248  Q
    |||||| ||||||||||||| |||||||||  |||||| || || ||||||||||||    
T  12904785 tgagtaatactttcgcatcatataaaacacctgagacactcgtttatttcaaccacc 12904729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 13149009 - 13148965
Alignment:
Q  313 atatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    ||||||||||| || |||||  |||||||||||||||||||||||    
T  13149009 atatttaaaccgtgtaacttggggtatgatatgatctccaacttt 13148965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 357
Target Start/End: Complemental strand, 28528388 - 28528233
Alignment:
Q  202 tttcgcatcacataaaacacacgagacattccttcatttcaaccacccatgcaaggttt-gatgatttacatctccttttatttctttgttgtttttcac 300  Q
    ||||||||||||||||||||  ||| || ||||  |||||||||||||| ||  || || |||| |||||| |||||| |||||||   |||||||  |     
T  28528388 tttcgcatcacataaaacacctgaggcactcctcaatttcaaccaccca-gctcggattcgatggtttacacctccttctatttctccattgttttgtaa 28528290  T
Q  301 tataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
     ||| |||||| ||||||||||  || ||||| ||||||| ||||||||||||||||    
T  28528289 catagacccaagatatttaaactgtgtaacttgtggtatgctatgatctccaacttt 28528233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 353
Target Start/End: Original strand, 32066805 - 32066894
Alignment:
Q  261 gatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaa 353  Q
    |||||||||||| | ||||||||||| |||  ||||  ||||| ||||||||||||||||||  || |||||   ||||||||||||||||||    
T  32066805 gatgatttacatttgcttttatttctctgtcattttgtactatgaacccaaaatatttaaactgtgtaactt---gtatgatatgatctccaa 32066894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 19936224 - 19936175
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaact 355  Q
    |||||| |||||||||||||| |||||  |||||||||||||||||||||    
T  19936224 acccaagatatttaaaccatgtaacttggggtatgatatgatctccaact 19936175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 8671623 - 8671572
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  8671623 acccaagatatttaaaccgtgtaacttagggtatgatatgatctccaacttt 8671572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 51601761 - 51601710
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  51601761 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 51601710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 52442826 - 52442909
Alignment:
Q  65 tctaatcttactacacatccaacacaacttcttcatatctattatgcttaattcatgtttgtgttggttgtttaccaccaaaca 148  Q
    |||| |||||| |||||||||||||||| || |||| |||  || |||||||| || ||||||||| ||  |||||||||||||    
T  52442826 tctagtcttaccacacatccaacacaacatcctcatgtctgctacgcttaatttatttttgtgttgtttcattaccaccaaaca 52442909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 43240962 - 43241011
Alignment:
Q  308 ccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  43240962 ccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 43241011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 18793459 - 18793503
Alignment:
Q  198 gtactttcgcatcacataaaacacacgagacattccttcatttca 242  Q
    ||||||||||||||||||||||||  |||||| |||| |||||||    
T  18793459 gtactttcgcatcacataaaacacctgagacactcctccatttca 18793503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 40419377 - 40419333
Alignment:
Q  313 atatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    ||||||||||  || ||||| ||||||||||||||||||||||||    
T  40419377 atatttaaactgtgtaacttgtggtatgatatgatctccaacttt 40419333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 49347972 - 49348024
Alignment:
Q  306 acccaaaatatttaaacca-tgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| |||||||||||| || |||||  |||||||||||||||||||||||    
T  49347972 acccaagatatttaaaccagtgtaacttggggtatgatatgatctccaacttt 49348024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 12177 - 12228
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| |||||||||||||| |||||  |||||||||||||||||||||||    
T  12177 acccaagatatttaaaccatgtaacttggggtatgatatgatctccaacttt 12228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 357
Target Start/End: Complemental strand, 38606753 - 38606657
Alignment:
Q  261 gatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||| ||||||||| ||| |||||||| ||  ||||  |||||  |||||| ||||||||||| || |||||  | |||||||||||||||||||||    
T  38606753 gatggtttacatctgcttctatttcttcgtcattttgtactatggacccaagatatttaaaccgtgtaacttgggatatgatatgatctccaacttt 38606657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 32630310 - 32630259
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  32630310 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 32630259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 46356430 - 46356481
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  46356430 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 46356481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 357
Target Start/End: Original strand, 43793514 - 43793670
Alignment:
Q  198 gtactttcgcatcacataaaacacacgagacattccttcatttcaaccacccatgcaaggtttgatgatttacatctccttttatttctttgttgttttt 297  Q
    |||||||| |||||||||| ||||  |||  | |||| ||||||||||||| |    || ||||||| ||||||||||||   ||||||| ||  ||||     
T  43793514 gtactttcacatcacataatacacctgaggaactcctccatttcaaccacctagcttagatttgatggtttacatctcct---atttcttcgtcattttg 43793610  T
Q  298 cactataaacccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
     |||||| |||||| |||||||||   || ||||  ||||||||||||||||| ||||||    
T  43793611 tactatagacccaagatatttaaaatgtgtaactagtggtatgatatgatctctaacttt 43793670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 33350392 - 33350436
Alignment:
Q  313 atatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    ||||||||||| || |||||  |||||||||||||||||||||||    
T  33350392 atatttaaaccgtgtaacttggggtatgatatgatctccaacttt 33350436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 2849 - 2900
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  2849 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 2900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 5895 - 5844
Alignment:
Q  306 acccaaaatatttaaaccatgcaacttttggtatgatatgatctccaacttt 357  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  5895 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttt 5844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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