View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16731_high_14 (Length: 381)

Name: NF16731_high_14
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16731_high_14
NF16731_high_14
[»] chr5 (3 HSPs)
chr5 (251-372)||(43514063-43514184)
chr5 (18-119)||(43514364-43514465)
chr5 (193-253)||(43514230-43514290)
[»] chr4 (6 HSPs)
chr4 (251-372)||(44892078-44892199)
chr4 (251-372)||(11146537-11146659)
chr4 (18-119)||(44891797-44891898)
chr4 (18-119)||(11146839-11146940)
chr4 (193-253)||(11146705-11146765)
chr4 (193-253)||(44891972-44892032)
[»] chr1 (3 HSPs)
chr1 (251-372)||(26852684-26852806)
chr1 (18-119)||(26852986-26853087)
chr1 (193-253)||(26852852-26852912)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 251 - 372
Target Start/End: Complemental strand, 43514184 - 43514063
Alignment:
Q  251 cttgagtgttttcagtatgcgagaaacatgaattggctccttcaagaaaacctaaatccccaaattcatttttattaagtcttttttattaaaacaattc 350  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43514184 cttgagtgttttcagtatgcaagaaacatgaattggctccttcaagaaaacctaaatccccaaattcatttttattaagtcttttttattaaaacaattc 43514085  T
Q  351 ttttaaaatgaaagagaattat 372  Q
    ||||||||||||||||||||||    
T  43514084 ttttaaaatgaaagagaattat 43514063  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 43514465 - 43514364
Alignment:
Q  18 ctttatatttctttaacctggaaccggttgtccaggtgaactcgctgtgttattttgttttaannnnnnncaccgtctttctcacgatgaaattggagat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||       ||||||||||||||| ||||||||||||||    
T  43514465 ctttatatttctttaacctggaaccggttgtccaggtgaacttactgtgttattttgttttaatttttttcaccgtctttctcacaatgaaattggagat 43514366  T
Q  118 cg 119  Q
    ||    
T  43514365 cg 43514364  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 43514290 - 43514230
Alignment:
Q  193 tctgtcaatatttgtgttcaataaaaaattatgtcatgcttgatcttcatccccatatctt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43514290 tctgtcaatatttgtgttcaataaaaaattatgtcatgcttgatcttcatccccatatctt 43514230  T

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Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 251 - 372
Target Start/End: Original strand, 44892078 - 44892199
Alignment:
Q  251 cttgagtgttttcagtatgcgagaaacatgaattggctccttcaagaaaacctaaatccccaaattcatttttattaagtcttttttattaaaacaattc 350  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44892078 cttgagtgttttcagtatgcaagaaacatgaattggctccttcaagaaaacctaaatccccaaattcatttttattaagtcttttttattaaaacaattc 44892177  T
Q  351 ttttaaaatgaaagagaattat 372  Q
    ||||||||||||||||||||||    
T  44892178 ttttaaaatgaaagagaattat 44892199  T

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Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 251 - 372
Target Start/End: Complemental strand, 11146659 - 11146537
Alignment:
Q  251 cttgagtgttttcagtatgcgagaaacatgaattggctccttcaagaaaacctaaatccccaaattcat-ttttattaagtcttttttattaaaacaatt 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  11146659 cttgagtgttttcagtatgcgagaaacatgaattggctccttcaagaaaacctaaatcccgaaattcattttttattaagtcttttttattaaaacaatt 11146560  T
Q  350 cttttaaaatgaaagagaattat 372  Q
    |||||||||||||||||||||||    
T  11146559 cttttaaaatgaaagagaattat 11146537  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 44891797 - 44891898
Alignment:
Q  18 ctttatatttctttaacctggaaccggttgtccaggtgaactcgctgtgttattttgttttaannnnnnncaccgtctttctcacgatgaaattggagat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||       ||||||||||||||| ||||||||||||||    
T  44891797 ctttatatttctttaacctggaaccggttgtccaggtgaactcactgtgttattttgttttaatttttttcaccgtctttctcacaatgaaattggagat 44891896  T
Q  118 cg 119  Q
    ||    
T  44891897 cg 44891898  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 11146940 - 11146839
Alignment:
Q  18 ctttatatttctttaacctggaaccggttgtccaggtgaactcgctgtgttattttgttttaannnnnnncaccgtctttctcacgatgaaattggagat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||       ||||||||||||||| ||||||||||||||    
T  11146940 ctttatatttctttaacctggaaccggttgtccaggtgaactcactgtgttattttgtttaaatttttttcaccgtctttctcacaatgaaattggagat 11146841  T
Q  118 cg 119  Q
    ||    
T  11146840 cg 11146839  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 11146765 - 11146705
Alignment:
Q  193 tctgtcaatatttgtgttcaataaaaaattatgtcatgcttgatcttcatccccatatctt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11146765 tctgtcaatatttgtgttcaataaaaaattatgtcatgcttgatcttcatccccatatctt 11146705  T

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Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 44891972 - 44892032
Alignment:
Q  193 tctgtcaatatttgtgttcaataaaaaattatgtcatgcttgatcttcatccccatatctt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44891972 tctgtcaatatttgtgttcaataaaaaattatgtcatgcttgatcttcatccccatatctt 44892032  T

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Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 251 - 372
Target Start/End: Complemental strand, 26852806 - 26852684
Alignment:
Q  251 cttgagtgttttcagtatgcgagaaacatgaattggctccttcaagaaaacctaaatccccaaattcat-ttttattaagtcttttttattaaaacaatt 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26852806 cttgagtgttttcagtatgcgagaaacatgaattggctccttcaagaaaacctaaatccccaaattcattttttattaagtcttttttattaaaacaatt 26852707  T
Q  350 cttttaaaatgaaagagaattat 372  Q
    |||||||||||||||||||||||    
T  26852706 cttttaaaatgaaagagaattat 26852684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 26853087 - 26852986
Alignment:
Q  18 ctttatatttctttaacctggaaccggttgtccaggtgaactcgctgtgttattttgttttaannnnnnncaccgtctttctcacgatgaaattggagat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||       ||||||||||||||| ||||||||||||||    
T  26853087 ctttatatttctttaacctggaaccggttgtccaggtgaactcactgtgttattttgttttaatttttttcaccgtctttctcacaatgaaattggagat 26852988  T
Q  118 cg 119  Q
    ||    
T  26852987 cg 26852986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 26852912 - 26852852
Alignment:
Q  193 tctgtcaatatttgtgttcaataaaaaattatgtcatgcttgatcttcatccccatatctt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26852912 tctgtcaatatttgtgttcaataaaaaattatgtcatgcttgatcttcatccccatatctt 26852852  T

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