View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16731_high_16 (Length: 364)
Name: NF16731_high_16
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16731_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 24405708 - 24405382
Alignment:
| Q |
19 |
agttgttgtagttgattcttcattatccttttgtgtaagtcttttaagcacctgagttagttacattttcaatccttgattaccccggttgcgtataaat |
118 |
Q |
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| T |
24405708 |
agttgttgtagttgattcttcattatcctattgtgtaagtcttttaggcacctgagttagttacattttcaatccttgattaccccggttgcgtataaat |
24405609 |
T |
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| Q |
119 |
aagaagttgaagatagttaaagtatactcatacgcatactcataattgatatatggagcattggttgcatgttttgcagaattgctcaagtggctacagg |
218 |
Q |
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| T |
24405608 |
aagaagttgaagatagttaaagtatactcatac------tcataattgatatatggagcattggttgcatgttttgcagaattgctcaagtggctacagg |
24405515 |
T |
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| Q |
219 |
gtgctccagtttgttcaatttcagaagctaataacatgtctttcttgttttaaattgataagggctatatacacttatctatatatggatccacataaat |
318 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24405514 |
gtgctccaatttgttcaatttcagaagctaataacatgtctttcttgttttaaattgataagggctatatacacttgtctatatatggatccacataaat |
24405415 |
T |
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| Q |
319 |
tattactggccagttatgtatattttcagcttc |
351 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
24405414 |
tattactggccagttatctatattttcagcttc |
24405382 |
T |
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