View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16731_high_17 (Length: 355)
Name: NF16731_high_17
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16731_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 250 - 344
Target Start/End: Complemental strand, 32773034 - 32772940
Alignment:
| Q |
250 |
aagatctgcatgaagtaaatcaactaaaacacatggaaaggtttcaactttatcatcatcatcaatggcatttccattaccaacttcatattcat |
344 |
Q |
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| T |
32773034 |
aagatctgcatgaagtaaatcaactaaaacacatggaaaggtttcaactttatcatcatcatcaatgacatttccattaccaacttcatcttcat |
32772940 |
T |
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Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 32773266 - 32773211
Alignment:
| Q |
18 |
cattctcttgctccggtaacacgacaagacctacttccgggtcgggtccttgatgg |
73 |
Q |
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| T |
32773266 |
cattctcttgctccggtaacacgacaagacctacttccgggtcgggttcttgatgg |
32773211 |
T |
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