View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16731_high_27 (Length: 270)
Name: NF16731_high_27
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16731_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 52113514 - 52113277
Alignment:
| Q |
17 |
caacaacaacaacagtgtccggcacagacacaacatcgtcattagtttcacccgaaccacccaaaaaactttcaatgcgaagaatccctggagattacgg |
116 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52113514 |
caacaacaacaacagcgtccggcacagacacaacatcgtcattagtttcacccgaaccacccaaaaaacttccaatgcgaagaatccctggagattacgg |
52113415 |
T |
|
| Q |
117 |
cctcccattcgtaggtcctatcaaagaccgtcttgaatatttctacaacgaaggcggccgcgacaaatatttcagaagtaaaatgcacaaatacaaatca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
52113414 |
cctcccattcgtaggtcctatcaaagaccgtcttgaatatttctacaacgaaggcggccgcgacaaatatttcagaagcaaaatgcacaaatacaaatca |
52113315 |
T |
|
| Q |
217 |
accatttttcgcgctaatatgccaccaggcccattcat |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52113314 |
accatttttcgcgctaatatgccaccaggcccattcat |
52113277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University