View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16731_high_3 (Length: 682)
Name: NF16731_high_3
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16731_high_3 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 593; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 17 - 665
Target Start/End: Original strand, 40086737 - 40087385
Alignment:
| Q |
17 |
accatggaggaaccaactttgaccgaagtactggaggaccattcattgctacaagttatgattttgatgcaccgattgatgagtatggtatgactccttc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40086737 |
accatggaggaaccaactttgaccgaagtactggaggaccattcattgcaacaagttatgattttgatgcaccgattgatgagtatggtatgactccttc |
40086836 |
T |
|
| Q |
117 |
aaccttattattgaaatctattgttcatgttgtagccgtcacaaatacaacactggtaatacatcgaagaagataaattgataatatcacatgcatagtt |
216 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
40086837 |
aaccttcttattgaaatctattgttcatgttgtagccgtcacaaatacaacactggtaatacatcgaagaagataaattgataatatcacatggatagtt |
40086936 |
T |
|
| Q |
217 |
tatttcttgtatatagaagagaaattacactggacgattggattttttgatatcttcgctacatgctgcaggagttattaggcagccgaagtggggtcat |
316 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40086937 |
tatttcttatatgtagaagagaaattacactggacgattggattttttaatatcttcgctacatgctgcaggagttattaggcagccgaagtggggtcat |
40087036 |
T |
|
| Q |
317 |
cttaaagatgtgcacaaggccataaagctttgtgaagaagcattaatagctgcagaacccaagattacttctcttggtccaaacctagaggtatagatgg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
40087037 |
cttaaagatgtgcacaaggccataaagctttgtgaagaagcattaatagccgcagaacccaagattacttatcttggtccaaacctagaggtatagatgg |
40087136 |
T |
|
| Q |
417 |
tttatattgaaatttttgttcgtttgaaacatcttattccgtgtcttaggatataatatattttgtaactaaaactcatctggtttgtcaatcgtgtaag |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
40087137 |
tttatattgaaatttttgttcgtttgaaacatcttattccgcgtcttaggatataatttattttgtaactaaaactcatctggtttgtcaatagtgtaag |
40087236 |
T |
|
| Q |
517 |
attctttctttgaaaaattcccggcattaatagtcttttactaattaaaccgcaggcggccgtttataagacaggatctgtatgtgttgcctttctcgcc |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
40087237 |
attctttctttgaaaaattcccggcattaatagtcttttactaataaaaccgcaggcggccgtttataagacaggatctgtatgtgctgcctttctcgcc |
40087336 |
T |
|
| Q |
617 |
aatgtggacgccaaatctgataaaactgtaaatttcagtggcaattcat |
665 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
40087337 |
aatgtggacgccaaatctgataaaaccgtaaatttcagtggcaattcat |
40087385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 509
Target Start/End: Original strand, 40060838 - 40061339
Alignment:
| Q |
17 |
accatggaggaaccaactttgaccgaagtactggaggaccattcattgctacaagttatgattttgatgcaccgattgatgagtatggtatgactccttc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |
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|
| T |
40060838 |
accatggaggaaccaactttgaccgaagtaccggcggaccattcattgctacaagttacgattttgatgcaccgattgatgaatatggtatg--tccttc |
40060935 |
T |
|
| Q |
117 |
aaccttattattgaa-atctattgttcatgttgtagccgtcacaaa-tacaacactggtaatacatcgaagaagataaattgataatatcacatgcatag |
214 |
Q |
| |
|
| ||| || | || || | ||||||||||||||||| ||||||| | | ||| ||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
40060936 |
agcctacatactaaatatatgttgttcatgttgtagccatcacaaaatgtaccaccggtaatacatcgaagaagataaattaataatatcacatgcatag |
40061035 |
T |
|
| Q |
215 |
tttatttcttgtatatagaagagaaattacactggacgattgg--------------attttttgatatcttcgctacatgctgcaggagttattaggca |
300 |
Q |
| |
|
|||||||||| ||| | ||||||||||||||||||| |||| ||||||| |||| || |||| || |||||||| |||||||||| |
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|
| T |
40061036 |
tttatttcttatatgcacaagagaaattacactggacaattgtgttttttaatatatattttttaatatatttgctatatactgcaggaattattaggca |
40061135 |
T |
|
| Q |
301 |
gccgaagtggggtcatcttaaagatgtgcacaaggccataaagctttgtgaagaagcattaatagctgcagaacccaagattacttctcttggtccaaac |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
40061136 |
gccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagctacagaacctaagattacttctcttggtccaaac |
40061235 |
T |
|
| Q |
401 |
ctagaggtatagatggtttatattgaaatttttgttcgtttgaaacatcttattccgtgtcttaggatataatatattttgtaactaaaactcatctggt |
500 |
Q |
| |
|
||||||||| || |||||||||||||||||||| ||||| |||||||| || ||||||||||| ||| |||||||||||||||||||||| || |
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|
| T |
40061236 |
ctagaggtagaggcggtttatattgaaatttttgcccgttt-----atcttatttcgcgtcttaggatagaatttattttgtaactaaaactcatccagt |
40061330 |
T |
|
| Q |
501 |
ttgtcaatc |
509 |
Q |
| |
|
||||||||| |
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|
| T |
40061331 |
ttgtcaatc |
40061339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 17 - 538
Target Start/End: Original strand, 40078964 - 40079503
Alignment:
| Q |
17 |
accatggaggaaccaactttgaccgaagtactggaggaccattcattgctacaagttatgattttgatgcaccgattgatgagtatggtatgactccttc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40078964 |
accatggaggaaccaactttgaccgaagtaccggcggacctttcattgctacaagttatgattatgatgcaccgattgatgagtatggtatgactctttc |
40079063 |
T |
|
| Q |
117 |
aaccttattattgaaatctattgttcatgttgtagccgtcacaaatacaacactggtaatacatcg-------aagaagataaattgataatatcacatg |
209 |
Q |
| |
|
||||||| || || | ||||||||||||||||| || ||||| || |||||||||||| ||| ||||||||||||| ||||||| ||| | |
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|
| T |
40079064 |
aaccttaatacgagtatattttgttcatgttgtagccatcgcaaatgcaccactggtaatacctcggtcctcgaagaagataaattaataatattacacg |
40079163 |
T |
|
| Q |
210 |
catagtttatttcttgtatatagaagagaaattacactggacgattggattt-----tttgatatcttcgctacatgctgcaggagttattaggcagccg |
304 |
Q |
| |
|
||||||| |||||| ||| |||||||||||||||||||||| ||| | | ||| |||||| ||| | ||||||||| |||||||||||| |
|
|
| T |
40079164 |
catagttattttcttttatttagaagagaaattacactggacaattttctgtgtgtgtttaatatctctactatacgctgcaggaattattaggcagcaa |
40079263 |
T |
|
| Q |
305 |
aagtggggtcatcttaaagatgtgcacaaggccataaagctttgtgaagaagcattaatagctgcagaacccaagattacttctcttggtccaaacctag |
404 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | || ||||||||| | |||||||||| |||||||| |
|
|
| T |
40079264 |
aagtggggtcatcttaaagatgtacacaaggccataaagctttgtgaagaagcactaatagctactgatcccaagatttcatctcttggtcaaaacctag |
40079363 |
T |
|
| Q |
405 |
aggtatagatggtttatattgaaatttttgttcgtttgaaacatcttattccgtgtcttaggata-taatatat-----tttgtaactaaaactcatctg |
498 |
Q |
| |
|
|||||||| |||| | ||||||||||||||| ||| ||||||||||| ||| ||||||||||| ||||| | |||||||||||| || ||| |
|
|
| T |
40079364 |
aggtataggtggtatgtattgaaatttttgtctgttcgaaacatcttactccacgtcttaggatagaaatatctggatcattgtaactaaaattcttcta |
40079463 |
T |
|
| Q |
499 |
gtttgtcaatcgtgtaagattctttctttgaaaaattccc |
538 |
Q |
| |
|
||||||||||| |||||| | |||||| || ||||||||| |
|
|
| T |
40079464 |
gtttgtcaatcttgtaagttactttctctggaaaattccc |
40079503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 548 - 665
Target Start/End: Original strand, 40061419 - 40061536
Alignment:
| Q |
548 |
agtcttttactaattaaaccgcaggcggccgtttataagacaggatctgtatgtgttgcctttctcgccaatgtggacgccaaatctgataaaactgtaa |
647 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||| | ||| |||||||||||||| |
|
|
| T |
40061419 |
agtcttttactatttaaaacgcaggcggcagtttataagacaggatctgtatgtgctgcctttctcgccaacgtggacactaaaagtgataaaactgtaa |
40061518 |
T |
|
| Q |
648 |
atttcagtggcaattcat |
665 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
40061519 |
atttcagtggcaattcat |
40061536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 543 - 665
Target Start/End: Original strand, 40079560 - 40079682
Alignment:
| Q |
543 |
ttaatagtcttttactaattaaaccgcaggcggccgtttataagacaggatctgtatgtgttgcctttctcgccaatgtggacgccaaatctgataaaac |
642 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||| | ||| ||||||||| |
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|
| T |
40079560 |
ttaacagtcttttactatttaaaccgcaggcggcagtttataagacaggatctgtatgtgctgcctttctcgccaacgtggatactaaaaatgataaaac |
40079659 |
T |
|
| Q |
643 |
tgtaaatttcagtggcaattcat |
665 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
40079660 |
cgtaaatttcagtggcaattcat |
40079682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 283 - 366
Target Start/End: Complemental strand, 22014313 - 22014230
Alignment:
| Q |
283 |
tgcaggagttattaggcagccgaagtggggtcatcttaaagatgtgcacaaggccataaagctttgtgaagaagcattaatagc |
366 |
Q |
| |
|
|||||||| |||||| ||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
22014313 |
tgcaggagatattagacagcccaaatggggtcatcttaaagatttgcacaaggccataaagctttgtgaagaagcattgatagc |
22014230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 22014511 - 22014420
Alignment:
| Q |
17 |
accatggaggaaccaactttgaccgaagtactggaggaccattcattgctacaagttatgattttgatgcaccgattgatgagtatggtatg |
108 |
Q |
| |
|
|||||||||| || ||||||| |||| || || ||||| |||||| | || |||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
22014511 |
accatggagggactaactttggtcgaacaacgggtggacctttcatttcaacgagttatgattatgatgcacccattgatgagtatggtatg |
22014420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 52548994 - 52548938
Alignment:
| Q |
19 |
catggaggaaccaactttgaccgaagtactggaggaccattcattgctacaagttat |
75 |
Q |
| |
|
||||||||||| |||||||| |||| | |||| ||||| |||||||||||||||||| |
|
|
| T |
52548994 |
catggaggaactaactttgatcgaacttctggtggacccttcattgctacaagttat |
52548938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 35259377 - 35259417
Alignment:
| Q |
66 |
tacaagttatgattttgatgcaccgattgatgagtatggta |
106 |
Q |
| |
|
|||||||||||||| |||||| || |||||||||||||||| |
|
|
| T |
35259377 |
tacaagttatgattatgatgctccaattgatgagtatggta |
35259417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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