View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16731_high_5 (Length: 549)

Name: NF16731_high_5
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16731_high_5
NF16731_high_5
[»] chr2 (26 HSPs)
chr2 (3-535)||(41655111-41655643)
chr2 (419-535)||(43223753-43223865)
chr2 (171-266)||(11818488-11818583)
chr2 (336-423)||(15803350-15803437)
chr2 (171-266)||(36641359-36641454)
chr2 (171-254)||(11553327-11553410)
chr2 (338-421)||(13018296-13018379)
chr2 (362-421)||(41099933-41099992)
chr2 (388-424)||(12963789-12963825)
chr2 (380-424)||(16625629-16625673)
chr2 (338-421)||(43572362-43572445)
chr2 (191-266)||(14231043-14231118)
chr2 (168-250)||(5595111-5595193)
chr2 (362-424)||(21835112-21835174)
chr2 (338-423)||(26905990-26906075)
chr2 (379-421)||(31083019-31083061)
chr2 (391-425)||(38293757-38293791)
chr2 (165-226)||(17102774-17102835)
chr2 (391-424)||(18780251-18780284)
chr2 (392-421)||(26599073-26599102)
chr2 (163-220)||(27072363-27072420)
chr2 (165-226)||(32019508-32019569)
chr2 (391-424)||(44137026-44137059)
chr2 (379-423)||(7367799-7367843)
chr2 (391-423)||(30312579-30312611)
chr2 (352-419)||(36870431-36870499)
[»] chr7 (19 HSPs)
chr7 (22-319)||(39969857-39970154)
chr7 (28-326)||(19587311-19587609)
chr7 (159-326)||(40063071-40063238)
chr7 (171-262)||(15633229-15633320)
chr7 (364-424)||(38505159-38505219)
chr7 (336-423)||(23465816-23465903)
chr7 (362-421)||(33871778-33871837)
chr7 (171-267)||(48100784-48100880)
chr7 (171-264)||(17238720-17238813)
chr7 (362-426)||(42254172-42254236)
chr7 (171-266)||(13015008-13015103)
chr7 (165-226)||(6621360-6621421)
chr7 (165-226)||(15846914-15846975)
chr7 (165-226)||(15856124-15856185)
chr7 (391-424)||(33406811-33406844)
chr7 (238-314)||(9350508-9350584)
chr7 (391-423)||(33113815-33113847)
chr7 (392-424)||(41500980-41501012)
chr7 (395-423)||(43189094-43189122)
[»] chr3 (23 HSPs)
chr3 (28-327)||(51110389-51110688)
chr3 (24-314)||(31160786-31161076)
chr3 (171-268)||(49499410-49499507)
chr3 (336-421)||(53888664-53888749)
chr3 (362-421)||(3537410-3537469)
chr3 (362-421)||(34280691-34280750)
chr3 (336-421)||(35283265-35283350)
chr3 (361-421)||(5939599-5939659)
chr3 (170-254)||(19792286-19792370)
chr3 (338-421)||(44400879-44400962)
chr3 (171-266)||(16739475-16739570)
chr3 (168-254)||(13760166-13760252)
chr3 (338-423)||(37673969-37674054)
chr3 (391-424)||(30121337-30121370)
chr3 (362-423)||(41099553-41099614)
chr3 (390-426)||(11500973-11501009)
chr3 (392-424)||(27055733-27055765)
chr3 (379-423)||(27682024-27682068)
chr3 (392-424)||(36185223-36185255)
chr3 (392-424)||(43237170-43237202)
chr3 (338-421)||(48908710-48908793)
chr3 (392-424)||(55439463-55439495)
chr3 (392-424)||(55444974-55445006)
[»] chr6 (13 HSPs)
chr6 (26-213)||(21997438-21997625)
chr6 (159-326)||(11604095-11604262)
chr6 (178-262)||(23508899-23508983)
chr6 (191-266)||(16416621-16416696)
chr6 (362-425)||(32719113-32719176)
chr6 (222-268)||(187086-187132)
chr6 (164-269)||(16436474-16436579)
chr6 (165-226)||(17812245-17812306)
chr6 (280-325)||(21997638-21997683)
chr6 (384-421)||(28551725-28551762)
chr6 (165-226)||(33132281-33132342)
chr6 (391-427)||(2365776-2365812)
chr6 (162-254)||(30449486-30449578)
[»] chr1 (31 HSPs)
chr1 (28-314)||(21249556-21249842)
chr1 (161-314)||(5068362-5068514)
chr1 (171-268)||(13288087-13288184)
chr1 (178-266)||(24065220-24065308)
chr1 (171-254)||(41117189-41117272)
chr1 (168-314)||(35151207-35151353)
chr1 (349-425)||(2909308-2909384)
chr1 (340-424)||(43036138-43036222)
chr1 (336-424)||(49102790-49102878)
chr1 (168-254)||(9928950-9929036)
chr1 (191-264)||(24083395-24083468)
chr1 (338-421)||(37649434-37649517)
chr1 (362-421)||(14439774-14439833)
chr1 (385-424)||(39508995-39509034)
chr1 (391-426)||(43572130-43572165)
chr1 (171-241)||(24427565-24427635)
chr1 (338-424)||(34154153-34154239)
chr1 (386-424)||(50587260-50587298)
chr1 (391-424)||(896669-896702)
chr1 (171-264)||(9361767-9361860)
chr1 (165-226)||(17431166-17431227)
chr1 (392-425)||(17675418-17675451)
chr1 (171-256)||(18122722-18122807)
chr1 (363-424)||(24369078-24369139)
chr1 (363-424)||(36887074-36887135)
chr1 (338-419)||(37875572-37875653)
chr1 (165-226)||(44002249-44002310)
chr1 (336-420)||(52073249-52073333)
chr1 (165-213)||(18984750-18984798)
chr1 (226-314)||(26618074-26618162)
chr1 (392-424)||(47905869-47905901)
[»] chr5 (18 HSPs)
chr5 (30-323)||(13574580-13574873)
chr5 (28-268)||(20476603-20476843)
chr5 (362-423)||(38568195-38568256)
chr5 (338-425)||(10843214-10843301)
chr5 (171-266)||(2157822-2157917)
chr5 (191-254)||(36044937-36045000)
chr5 (338-425)||(39649751-39649838)
chr5 (391-425)||(4841522-4841556)
chr5 (379-421)||(9684609-9684651)
chr5 (171-213)||(19237666-19237708)
chr5 (163-220)||(36961983-36962040)
chr5 (163-220)||(42765280-42765337)
chr5 (392-424)||(4649157-4649189)
chr5 (168-212)||(6783310-6783354)
chr5 (165-213)||(11123600-11123648)
chr5 (191-255)||(19741586-19741650)
chr5 (279-327)||(20476363-20476411)
chr5 (391-423)||(35700930-35700962)
[»] chr4 (28 HSPs)
chr4 (28-327)||(42331615-42331915)
chr4 (30-212)||(38815790-38815972)
chr4 (240-314)||(42774960-42775034)
chr4 (338-423)||(38136650-38136735)
chr4 (360-424)||(35959369-35959433)
chr4 (338-423)||(29114059-29114144)
chr4 (171-256)||(28860789-28860874)
chr4 (366-423)||(55510112-55510169)
chr4 (362-421)||(22165584-22165643)
chr4 (171-266)||(27066585-27066680)
chr4 (171-266)||(27066779-27066874)
chr4 (171-266)||(27087492-27087587)
chr4 (362-421)||(33500725-33500784)
chr4 (257-324)||(38815716-38815783)
chr4 (336-423)||(42650810-42650897)
chr4 (171-266)||(54027747-54027842)
chr4 (168-266)||(26949224-26949322)
chr4 (391-425)||(38365897-38365931)
chr4 (391-425)||(41844310-41844344)
chr4 (359-421)||(48620481-48620543)
chr4 (382-419)||(368290-368327)
chr4 (338-422)||(30198588-30198672)
chr4 (171-264)||(34301809-34301902)
chr4 (171-268)||(37061092-37061189)
chr4 (392-425)||(48830985-48831018)
chr4 (391-423)||(904072-904104)
chr4 (391-423)||(32948696-32948728)
chr4 (379-419)||(42777121-42777161)
[»] chr8 (13 HSPs)
chr8 (159-314)||(41290161-41290315)
chr8 (171-266)||(42080464-42080559)
chr8 (362-420)||(79439-79497)
chr8 (363-424)||(29584379-29584440)
chr8 (338-421)||(12506014-12506097)
chr8 (165-264)||(13811668-13811767)
chr8 (171-266)||(26931906-26932001)
chr8 (164-202)||(19382756-19382794)
chr8 (362-424)||(34336234-34336296)
chr8 (391-424)||(3404752-3404785)
chr8 (165-226)||(14848419-14848480)
chr8 (197-254)||(40796574-40796631)
chr8 (222-266)||(953721-953765)
[»] scaffold0128 (1 HSPs)
scaffold0128 (349-422)||(26572-26645)
[»] scaffold0019 (1 HSPs)
scaffold0019 (171-262)||(73387-73478)
[»] scaffold0011 (1 HSPs)
scaffold0011 (171-264)||(191051-191144)
[»] scaffold0632 (1 HSPs)
scaffold0632 (391-423)||(1892-1924)


Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 3 - 535
Target Start/End: Complemental strand, 41655643 - 41655111
Alignment:
Q  3 aggagtagcatagggtctcagtggttaagtgacatgcaacttgataatgtcgactttgagacggactctaaaaccacccatgacgcttttcactctcgta 102  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41655643 aggagaagcattgggtctcagtggttaagtgacatgcaacttgataatgtcgactttgagacggactctaaaaccacccatgatgcttttcactctcgta 41655544  T
Q  103 aagacaatgtttccgaatttggacaaattatttcggcctatcattctctctttagtactcacttcacaaactctcgggttgagtttactaggcgacaagc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  41655543 aagacaatgtttccgaatttggacaaattatttcggcctatcattctctctttagtactcacttcacaaactctcgggttgagtttactagacgacaaga 41655444  T
Q  203 aaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttattttaatccccctcgatgtattaacaatatcatttttaat 302  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41655443 aaatgaggttggtcacgcacttgcaggagaagccacattattagctagtcccgttatttattttaatccccctcgatgtattaacaatatcatttttaat 41655344  T
Q  303 gaaatgctataaccatatttccttcnnnnnnnntgtgaaagattgttctattttctcctatatttttcacccctcgaagccttccctccccctcccatcc 402  Q
    |||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  41655343 gaaatgctataaccatatttccttcaaaaaaaatgtgaaagattgttctattttctcctatatttttcacccctcgaagccttcccaccccctcccctcc 41655244  T
Q  403 aaactcccaaacaaagccttagattctaaatttatttcaaacgtagtacatcaagaaagcataataacactaataatacactttcaagttttaacgcaca 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41655243 aaactcccaaacaaagccttagattctaaatttatttcaaacgtagtacatcaagaaagcataataacactaataatacactttcaagttttaacgcaca 41655144  T
Q  503 atttaaaaaccatacctgtaactgtttttcatg 535  Q
    |||||||||||||||||||||||||||||||||    
T  41655143 atttaaaaaccatacctgtaactgtttttcatg 41655111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 419 - 535
Target Start/End: Original strand, 43223753 - 43223865
Alignment:
Q  419 ccttagattctaaatttatttcaaacgtagtacatcaagaaagcataataacactaataatacactttcaagttttaacgcacaatttaaaaaccatacc 518  Q
    |||||||||| |||||||||||||| | |||||||||| |||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||      
T  43223753 ccttagattccaaatttatttcaaatgcagtacatcaacaaagcataataacactaacaatgcacttttaagttttaacgcacaatttaaaaaccata-- 43223850  T
Q  519 tgtaactgtttttcatg 535  Q
      |||||||||||||||    
T  43223851 --taactgtttttcatg 43223865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 11818583 - 11818488
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatttt 266  Q
    |||||| |||| ||||||  ||||||||||||||| ||||||| |||    ||||||||||||||||| ||| |||||||||||||||||||||||    
T  11818583 aactctagggtggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactagctagtcccgttatttatttt 11818488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 336 - 423
Target Start/End: Original strand, 15803350 - 15803437
Alignment:
Q  336 tgtgaaagattgttctattttctcctatatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcctta 423  Q
    |||||||||||  || |||||| ||||||||| || |||| | ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  15803350 tgtgaaagatttctcaattttcccctatatttctctccccccaaagcctttccttcccctcccctccaaactcccaaacaaagcctta 15803437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 36641359 - 36641454
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatttt 266  Q
    ||||||||||| ||||||  |||||||||||| || ||||||| |||  | ||||||  ||||||||||||| |||||||||||||| ||||||||    
T  36641359 aactctcgggtggagtttgttaggcgacaagccaacgaggttgctcatgctcttgcaaaagaagccacattactagctagtcccgttgtttatttt 36641454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 11553327 - 11553410
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtccc 254  Q
    |||||| |||| ||||||||| |||||||||| |||||||||| |||    || |||||||||||||||||| |||||||||||    
T  11553327 aactctagggtggagtttactcggcgacaagctaatgaggttgatcatgttctcgcaggagaagccacattactagctagtccc 11553410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 13018379 - 13018296
Alignment:
Q  338 tgaaagattgttctattttctcctatatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    |||||||||  |||||||| ||  ||||||| |||||||| ||||||| |||  || |||| ||||||||||||||||||||||    
T  13018379 tgaaagatttctctattttttcacatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 13018296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 421
Target Start/End: Complemental strand, 41099992 - 41099933
Alignment:
Q  362 atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    |||||||||||||||| ||||||||||  |||||| | |||||| |||||||||||||||    
T  41099992 atatttttcacccctcaaagccttcccctcccctctcctccaaattcccaaacaaagcct 41099933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 424
Target Start/End: Complemental strand, 12963825 - 12963789
Alignment:
Q  388 ctccccctcccatccaaactcccaaacaaagccttag 424  Q
    |||||| ||||||||||||||||||||||||||||||    
T  12963825 ctccccttcccatccaaactcccaaacaaagccttag 12963789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 16625673 - 16625629
Alignment:
Q  380 agccttccctccccctcccatccaaactcccaaacaaagccttag 424  Q
    |||| ||||| |||||||| |||||||||||||||||||||||||    
T  16625673 agccctcccttcccctcccctccaaactcccaaacaaagccttag 16625629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 43572445 - 43572362
Alignment:
Q  338 tgaaagattgttctattttctcct-atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    |||||||||  |||||||| |||| ||||||| |||||||| ||||||| |||  || |||| ||||||||||||||||||||||    
T  43572445 tgaaagatttctctatttt-tcctcatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 43572362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 14231043 - 14231118
Alignment:
Q  191 taggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatttt 266  Q
    |||||||||||| |||| ||| | |||||| |||||| | |||||||||||  | |||||||||||||| ||||||    
T  14231043 taggcgacaagctaatgtggtggctcacactcttgcaagggaagccacatttctcgctagtcccgttatctatttt 14231118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 5595193 - 5595111
Alignment:
Q  168 acaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctag 250  Q
    |||||||||  ||| ||||||| ||||||||||||||||||||| | ||||||  | || ||||  |||||||||| ||||||    
T  5595193 acaaactctaaggtcgagtttagtaggcgacaagcaaatgaggtagctcacactttagcgggagctgccacattatcagctag 5595111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 424
Target Start/End: Original strand, 21835112 - 21835174
Alignment:
Q  362 atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagccttag 424  Q
    |||||||||||||||| ||||||| | | |||||||| |||||||||| ||| |||| |||||    
T  21835112 atatttttcacccctcaaagcctttcttacccctcccctccaaactccaaaagaaagtcttag 21835174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 423
Target Start/End: Original strand, 26905990 - 26906075
Alignment:
Q  338 tgaaagattgttctattttctcct-atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcctta 423  Q
    |||||||||  |||||||| |||| ||||||| |||||||| |||| || |||  || ||||||||||||||||||| |||||||||    
T  26905990 tgaaagatttctctatttt-tcctcatattttgcacccctcaaagcttttcctttccttcccatccaaactcccaaagaaagcctta 26906075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 421
Target Start/End: Original strand, 31083019 - 31083061
Alignment:
Q  379 aagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  31083019 aagcctttccttcccctcccctccaaactcccaaacaaagcct 31083061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 425
Target Start/End: Complemental strand, 38293791 - 38293757
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagccttaga 425  Q
    |||||||| ||||||||||||||||||||||||||    
T  38293791 cccctcccctccaaactcccaaacaaagccttaga 38293757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 17102835 - 17102774
Alignment:
Q  165 ttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgc 226  Q
    |||||||||||  |||| ||||||| |||| |||||||||||||||||| ||| | ||||||    
T  17102835 ttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgc 17102774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 18780284 - 18780251
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagccttag 424  Q
    |||||||| |||||||||||||||||||||||||    
T  18780284 cccctcccctccaaactcccaaacaaagccttag 18780251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 421
Target Start/End: Complemental strand, 26599102 - 26599073
Alignment:
Q  392 ccctcccatccaaactcccaaacaaagcct 421  Q
    ||||||||||||||||||||||||||||||    
T  26599102 ccctcccatccaaactcccaaacaaagcct 26599073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 27072363 - 27072420
Alignment:
Q  163 acttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacac 220  Q
    |||| ||||||||||  |||||||||| |||| | |||||||||||||||| ||||||    
T  27072363 acttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacac 27072420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 32019569 - 32019508
Alignment:
Q  165 ttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgc 226  Q
    |||||||||||  |||| ||||||| |||| |||||||||||||||||| ||| | ||||||    
T  32019569 ttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgc 32019508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 44137059 - 44137026
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagccttag 424  Q
    |||||||| |||||||||||||||||||||||||    
T  44137059 cccctcccctccaaactcccaaacaaagccttag 44137026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 7367799 - 7367843
Alignment:
Q  379 aagccttccctccccctcccatccaaactcccaaacaaagcctta 423  Q
    ||||||||||| || ||||| ||||||||| ||||||||||||||    
T  7367799 aagccttcccttccactcccctccaaactctcaaacaaagcctta 7367843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 30312579 - 30312611
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagcctta 423  Q
    |||||||| ||||||||||||||||||||||||    
T  30312579 cccctcccctccaaactcccaaacaaagcctta 30312611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 419
Target Start/End: Original strand, 36870431 - 36870499
Alignment:
Q  352 attttctcctatatttttcacccctcgaagccttccctccc-cctcccatccaaactcccaaacaaagc 419  Q
    |||||| |||||||||||| |||| | ||||||| ||| || |||||| |||||||||||||| |||||    
T  36870431 attttcccctatatttttctccccccaaagcctttccttcctcctcccctccaaactcccaaataaagc 36870499  T

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Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 22 - 319
Target Start/End: Original strand, 39969857 - 39970154
Alignment:
Q  22 agtggttaagtgacatgcaacttgataatgtcgactttgagacggactctaaaaccacccatgacgcttttcactctcgtaaagacaatgtttccgaatt 121  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| || |||||||||||||    
T  39969857 agtggttaagtaacatgcaacttgatcatgtcaactttgagacggactctaaaaccacccatgacgctttccattctcgtaaatacgatgtttccgaatt 39969956  T
Q  122 tggacaaattatttcggcctatcattctctctttagtactcacttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacaca 221  Q
    |||||||||||||||||| | ||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39969957 tggacaaattatttcggcttgtcaatctctctttaacactcacttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttgctcacaca 39970056  T
Q  222 cttgcaggagaagccacattattagctagtcccgttatttattttaatccccctcgatgtattaacaatatcatttttaatgaaatgctataaccata 319  Q
    ||||||| | |||||||||||||| |||| |||  ||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||| ||||    
T  39970057 cttgcagaataagccacattattaactagacccactatttattttaatccccctcattgtattaacaatatcatttttaatgaaatgttataagcata 39970154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 28 - 326
Target Start/End: Original strand, 19587311 - 19587609
Alignment:
Q  28 taagtgacatgcaacttgataatgtcgactttgagacggactctaaaaccacccatgacgcttttcactctcgtaaagacaatgtttccgaatttggaca 127  Q
    ||||||| |||||| |||| ||||| ||||||| |||||| || ||||  ||| |||| || |||||||||| ||||||  | || ||||| ||||||||    
T  19587311 taagtgatatgcaatttgacaatgtagactttgcgacggattcaaaaattacctatgatgcctttcactctcataaagatgacgtctccgagtttggaca 19587410  T
Q  128 aattatttcggcctatcattctctctttagtactcacttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgca 227  Q
     || ||||| |||| |||  |||||||    |||||||| |||||||||||||||||||| |||||| ||||||| |||| ||  | | |  ||||||||    
T  19587411 tatcatttcagcctgtcaagctctcttctccactcactttacaaactctcgggttgagttcactaggtgacaagcgaatgcggcagctaatgcacttgca 19587510  T
Q  228 ggagaagccacattattagctagtcccgttatttattttaatccccctcgatgtattaacaatatcatttttaatgaaatgctataaccatatttcctt 326  Q
     | || ||||| |  |||||||||||||| ||||||||||||  ||| || ||||| ||||||||||| |||||||||||||||||| ||| |||||||    
T  19587511 agggaggccacttctttagctagtcccgtcatttattttaatatcccgcgttgtataaacaatatcatctttaatgaaatgctataagcatctttcctt 19587609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 159 - 326
Target Start/End: Complemental strand, 40063238 - 40063071
Alignment:
Q  159 actcacttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgtta 258  Q
    ||||||||||||||||||||||||||||| | |||||||||||| |||| ||  | |||  || ||||||| || ||||| |  ||| |||||||||| |    
T  40063238 actcacttcacaaactctcgggttgagttcattaggcgacaagcgaatgcggcagctcatgcatttgcaggggaggccacttctttaactagtcccgtca 40063139  T
Q  259 tttattttaatccccctcgatgtattaacaatatcatttttaatgaaatgctataaccatatttcctt 326  Q
    |||||||||||  ||| || ||||| |||||||| || |||||||||||||||||| ||| |||||||    
T  40063138 tttattttaatatcccgcgttgtataaacaatattatctttaatgaaatgctataagcatctttcctt 40063071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 15633229 - 15633320
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttattta 262  Q
    ||||||||||| ||||||  |||||||||||| |||||||||| ||| || |||||| |||||||||| ||| |||||||||||||| ||||    
T  15633229 aactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatactcttgcaagagaagccacgttactagctagtcccgttgttta 15633320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 424
Target Start/End: Complemental strand, 38505219 - 38505159
Alignment:
Q  364 atttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagccttag 424  Q
    ||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||    
T  38505219 attttccacccctcaaagccttcccttcccctcccctccaaactcccaaacaaagccttag 38505159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 423
Target Start/End: Complemental strand, 23465903 - 23465816
Alignment:
Q  336 tgtgaaagattgttctattttctcctatatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcctta 423  Q
    ||||||||||| | | |||||| |||||||||   |||| || ||| ||||||| |||||||| ||||||||||||||||||||||||    
T  23465903 tgtgaaagattttaccattttcccctatatttccaacccttcaaagtcttcccttcccctcccctccaaactcccaaacaaagcctta 23465816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 421
Target Start/End: Complemental strand, 33871837 - 33871778
Alignment:
Q  362 atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    ||||||| |||||||| ||||||||||| |||||||| ||||||||| ||||||||||||    
T  33871837 atattttccacccctcaaagccttcccttcccctcccctccaaactcgcaaacaaagcct 33871778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 48100880 - 48100784
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatttta 267  Q
    |||||| |||| |||||| |||||||||||||||||| ||||| |||    |||||||||||| |||| ||  ||| |||||||||| |||||||||    
T  48100880 aactctagggtggagtttgctaggcgacaagcaaatgtggttgctcatgtgcttgcaggagaatccacgtttctagttagtcccgttgtttatttta 48100784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 17238813 - 17238720
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatt 264  Q
    |||||| |||| ||||||  |||||||||||| || | ||||| |||  |||||||| ||||||||||||| ||| ||||||||  ||||||||    
T  17238813 aactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagagaagccacattcttaactagtcccactatttatt 17238720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 426
Target Start/End: Original strand, 42254172 - 42254236
Alignment:
Q  362 atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagccttagat 426  Q
    ||||||| |||||||| ||||||| |||  || |||| |||||||||||||||||||||| ||||    
T  42254172 atattttacacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcctaagat 42254236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 13015103 - 13015008
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatttt 266  Q
    |||||||||||  |||||  |||||||||||| || ||||||| |||  | |||||| ||||| |||| ||| |||||||||| ||| ||||||||    
T  13015103 aactctcgggtgtagtttgttaggcgacaagccaacgaggttgctcatgctcttgcaagagaatccacgttactagctagtcctgttgtttatttt 13015008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 6621421 - 6621360
Alignment:
Q  165 ttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgc 226  Q
    |||||||||||  |||| ||||||| |||| |||||||||||||||||| ||| | ||||||    
T  6621421 ttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgc 6621360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 15846975 - 15846914
Alignment:
Q  165 ttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgc 226  Q
    |||||||||||  |||| ||||||| |||| |||||||||||||||||| ||| | ||||||    
T  15846975 ttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgc 15846914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 15856185 - 15856124
Alignment:
Q  165 ttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgc 226  Q
    |||||||||||  |||| ||||||| |||| |||||||||||||||||| ||| | ||||||    
T  15856185 ttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgc 15856124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 33406811 - 33406844
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagccttag 424  Q
    |||||||| |||||||||||||||||||||||||    
T  33406811 cccctcccctccaaactcccaaacaaagccttag 33406844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 314
Target Start/End: Original strand, 9350508 - 9350584
Alignment:
Q  238 cattattagctagtcccgttatttattttaatccccctcgatgtattaacaatatcatttttaatgaaatgctataa 314  Q
    |||||| ||||||||||  ||||||||||||  || |||  |||||||||  ||||||| | |||||||||||||||    
T  9350508 cattatcagctagtcccactatttattttaagacctctcattgtattaacggtatcattatcaatgaaatgctataa 9350584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 33113815 - 33113847
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagcctta 423  Q
    |||||||| ||||||||||||||||||||||||    
T  33113815 cccctcccctccaaactcccaaacaaagcctta 33113847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 424
Target Start/End: Original strand, 41500980 - 41501012
Alignment:
Q  392 ccctcccatccaaactcccaaacaaagccttag 424  Q
    ||||||| |||||||||||||||||||||||||    
T  41500980 ccctcccttccaaactcccaaacaaagccttag 41501012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 423
Target Start/End: Original strand, 43189094 - 43189122
Alignment:
Q  395 tcccatccaaactcccaaacaaagcctta 423  Q
    |||||||||||||||||||||||||||||    
T  43189094 tcccatccaaactcccaaacaaagcctta 43189122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 28 - 327
Target Start/End: Original strand, 51110389 - 51110688
Alignment:
Q  28 taagtgacatgcaacttgataatgtcgactttgagacggactctaaaaccacccatgacgcttttcactctcgtaaagacaatgtttccgaatttggaca 127  Q
    ||||||| |||||| |||| ||||| ||||||| |||||| || ||||  ||| |||| || |||||||||| ||||||  | || || || ||||||||    
T  51110389 taagtgatatgcaatttgacaatgtagactttgcgacggattcaaaaattacctatgatgcctttcactctcataaagatgacgtctctgagtttggaca 51110488  T
Q  128 aattatttcggcctatcattctctctttagtactcacttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgca 227  Q
     || ||||| |||| |||  |||||||    |||||||| ||||| |||||||||||||| |||||||||||||| |||| ||  | |||  ||||||||    
T  51110489 tatcatttcagcctgtcaagctctcttctccactcactttacaaattctcgggttgagttcactaggcgacaagcgaatgcggcagctcatgcacttgca 51110588  T
Q  228 ggagaagccacattattagctagtcccgttatttattttaatccccctcgatgtattaacaatatcatttttaatgaaatgctataaccatatttccttc 327  Q
     | || ||||| |  |||||||||||||| |||||||||||| |||| || ||||| ||||||||||| |||||||||||| ||||| ||| ||||||||    
T  51110589 agggaggccacttctttagctagtcccgtcatttattttaataccccacgttgtataaacaatatcatctttaatgaaatgttataagcatctttccttc 51110688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 24 - 314
Target Start/End: Original strand, 31160786 - 31161076
Alignment:
Q  24 tggttaagtgacatgcaacttgataatgtcgactttgagacggactctaaaaccacccatgacgcttttcactctcgtaaagacaatgtttccgaatttg 123  Q
    ||||||||||| |||| | | |||||||| ||||| || || || ||||| ||||| || || ||||| ||  ||| ||||||  | ||||| |||||||    
T  31160786 tggttaagtgatatgctattcgataatgttgacttcgaaacagattctaagaccactcacgatgctttccatgctcataaagatgacgtttctgaatttg 31160885  T
Q  124 gacaaattatttcggcctatcattctctctttagtactcacttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacact 223  Q
    |  | || ||| |||| | ||| | |||||| |  | ||| |||| ||||||| |||||||||| |||||| |||||||||||| ||||| |||  ||||    
T  31160886 gctatatcattgcggcttgtcaatatctcttcaccaatcaattcataaactcttgggttgagttcactaggtgacaagcaaatgtggttgctcatgcact 31160985  T
Q  224 tgcaggagaagccacattattagctagtcccgttatttattttaatccccctcgatgtattaacaatatcatttttaatgaaatgctataa 314  Q
    ||||| |||||||   |||| ||||| | ||| ||||||||||||| ||||||| |||||||||| | | |||||||||||||||||||||    
T  31160986 tgcagaagaagcctttttatcagctaattccgctatttattttaatacccctcgttgtattaacagtgttatttttaatgaaatgctataa 31161076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 268
Target Start/End: Original strand, 49499410 - 49499507
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttattttaa 268  Q
    |||||| |||| |||||| |||||||||||||||||| || || |||    |||||| |||||||||| ||  ||||||||| |||||||||||||||    
T  49499410 aactctagggtggagtttgctaggcgacaagcaaatgtggctgctcatgttcttgcaagagaagccacgtttctagctagtctcgttatttattttaa 49499507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 421
Target Start/End: Original strand, 53888664 - 53888749
Alignment:
Q  336 tgtgaaagattgttctattttctcctatatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    |||||||||||  || |||||| |||||||||||  || | | ||||||| ||| |||||||| ||||||||||||||||||||||    
T  53888664 tgtgaaagatttctcaattttcccctatatttttgtccacccaaagcctttccttcccctcccctccaaactcccaaacaaagcct 53888749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 421
Target Start/End: Original strand, 3537410 - 3537469
Alignment:
Q  362 atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    ||||||| |||||||| ||||||||||  ||| |||| ||||||||||||||||||||||    
T  3537410 atattttccacccctcaaagccttcccctcccttcccctccaaactcccaaacaaagcct 3537469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 421
Target Start/End: Original strand, 34280691 - 34280750
Alignment:
Q  362 atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    ||||||| |||||||| ||||||||||| |||| ||| ||||||||| ||||||||||||    
T  34280691 atattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 34280750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 421
Target Start/End: Original strand, 35283265 - 35283350
Alignment:
Q  336 tgtgaaagattgttctattttctcctatatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    |||||||||||  || ||||||||||||| || || ||||   || |||| ||| |||||||| ||||||||||||||||||||||    
T  35283265 tgtgaaagatttctcaattttctcctatacttctctcccccaaaatcctttccttcccctcccctccaaactcccaaacaaagcct 35283350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 421
Target Start/End: Complemental strand, 5939659 - 5939599
Alignment:
Q  361 tatatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    |||||||| |||||||| ||||||| |||  || |||| ||||||||||||||||||||||    
T  5939659 tatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 5939599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 19792286 - 19792370
Alignment:
Q  170 aaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtccc 254  Q
    |||||||  ||| ||||||| | || |||||||||||| ||||| ||| ||||||||  |||| ||||| |||||||||||||||    
T  19792286 aaactctaaggtggagtttaatcggagacaagcaaatgtggttgctcatacacttgctagagaggccactttattagctagtccc 19792370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 421
Target Start/End: Original strand, 44400879 - 44400962
Alignment:
Q  338 tgaaagattgttctattttctcct-atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    |||||||||  |||||||| |||| ||||||| |||||||| ||||||| |||  || |||| ||||||||||||||||||||||    
T  44400879 tgaaagatttctctatttt-tcctcatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 44400962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 16739570 - 16739475
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatttt 266  Q
    ||||||||||| ||||||  |||||||||| | || ||| ||| | |  | |||||| |||||||||| ||| |||||||||||||| ||||||||    
T  16739570 aactctcgggtggagtttgttaggcgacaaaccaacgagattgctaatgctcttgcaagagaagccacgttactagctagtcccgttgtttatttt 16739475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 13760252 - 13760166
Alignment:
Q  168 acaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtccc 254  Q
    |||||||||  |||||||||||||  |||||||||||||||||| | ||||   ||||| || |  ||| |||||||||||||||||    
T  13760252 acaaactctaaggttgagtttactctgcgacaagcaaatgaggtagctcacgtccttgccggggctgccccattattagctagtccc 13760166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 423
Target Start/End: Complemental strand, 37674054 - 37673969
Alignment:
Q  338 tgaaagattgttctattttctcct-atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcctta 423  Q
    |||||||||  |||||||| |||| ||||||| |||||||| ||||||| |||  || |||| |||||||||||||| |||||||||    
T  37674054 tgaaagatttctctatttt-tcctcatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaagaaagcctta 37673969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 30121370 - 30121337
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagccttag 424  Q
    |||||||| |||||||||||||||||||||||||    
T  30121370 cccctcccctccaaactcccaaacaaagccttag 30121337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 423
Target Start/End: Complemental strand, 41099614 - 41099553
Alignment:
Q  362 atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcctta 423  Q
    ||||||| |||||||| |||||||| |  ||| ||||||| ||||||||||||||| |||||    
T  41099614 atattttccacccctcaaagccttctcatcccttcccatctaaactcccaaacaaaacctta 41099553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 426
Target Start/End: Original strand, 11500973 - 11501009
Alignment:
Q  390 ccccctcccatccaaactcccaaacaaagccttagat 426  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  11500973 ccccctcccctccaaactcccaaacaaagcctaagat 11501009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 424
Target Start/End: Complemental strand, 27055765 - 27055733
Alignment:
Q  392 ccctcccatccaaactcccaaacaaagccttag 424  Q
    |||||||||||||||||||||||||| ||||||    
T  27055765 ccctcccatccaaactcccaaacaaaaccttag 27055733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 27682024 - 27682068
Alignment:
Q  379 aagccttccctccccctcccatccaaactcccaaacaaagcctta 423  Q
    ||||||| ||| | ||||||||| |||||||||||||||||||||    
T  27682024 aagcctttccttctcctcccatctaaactcccaaacaaagcctta 27682068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 424
Target Start/End: Original strand, 36185223 - 36185255
Alignment:
Q  392 ccctcccatccaaactcccaaacaaagccttag 424  Q
    ||||||| |||||||||||||||||||||||||    
T  36185223 ccctcccctccaaactcccaaacaaagccttag 36185255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 424
Target Start/End: Complemental strand, 43237202 - 43237170
Alignment:
Q  392 ccctcccatccaaactcccaaacaaagccttag 424  Q
    ||||||| |||||||||||||||||||||||||    
T  43237202 ccctcccctccaaactcccaaacaaagccttag 43237170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 48908793 - 48908710
Alignment:
Q  338 tgaaagattgttctattttctcct-atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    |||||||||  |||||||| |||| ||||| | |||||||| ||||||| |||  || |||| ||||||||||||||||||||||    
T  48908793 tgaaagatttctctatttt-tcctcatattctgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 48908710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 424
Target Start/End: Complemental strand, 55439495 - 55439463
Alignment:
Q  392 ccctcccatccaaactcccaaacaaagccttag 424  Q
    ||||||| |||||||||||||||||||||||||    
T  55439495 ccctcccctccaaactcccaaacaaagccttag 55439463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 424
Target Start/End: Complemental strand, 55445006 - 55444974
Alignment:
Q  392 ccctcccatccaaactcccaaacaaagccttag 424  Q
    ||||||| |||||||||||||||||||||||||    
T  55445006 ccctcccctccaaactcccaaacaaagccttag 55444974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 21997438 - 21997625
Alignment:
Q  26 gttaagtgacatgcaacttgataatgtcgactttgagacggactctaaaaccacccatgacgcttttcactctcgtaaagacaatgtttccgaatttgga 125  Q
    ||||||||| |||||  ||||||||||| ||||||||||||| ||||||||||  ||||| || ||  ||||||| ||| |  | |||||||||||||||    
T  21997438 gttaagtgatatgcagtttgataatgtcaactttgagacggattctaaaaccattcatgatgccttctactctcgcaaataagacgtttccgaatttgga 21997537  T
Q  126 caaattatttcggcctatcattctctctttagtactcacttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttg 213  Q
    || || |||| ||| | ||| |||||||||| ||| |||||||||||||||||  |||||||||  ||||||||| ||||||||||||    
T  21997538 catataattttggcttgtcaatctctctttactacccacttcacaaactctcgatttgagtttatgaggcgacaaacaaatgaggttg 21997625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 159 - 326
Target Start/End: Complemental strand, 11604262 - 11604095
Alignment:
Q  159 actcacttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgtta 258  Q
    |||||||| ||||| |||| ||||||||| |||||||||||||| |||| ||    |||  |||||||||| || ||||| |  |||||||||||||| |    
T  11604262 actcactttacaaattctcaggttgagttcactaggcgacaagcgaatgcggcaactcatgcacttgcaggggaggccacttctttagctagtcccgtca 11604163  T
Q  259 tttattttaatccccctcgatgtattaacaatatcatttttaatgaaatgctataaccatatttcctt 326  Q
    |||||||||||  ||| || ||||| || |||||||| |||||||||||||||||| ||| |||||||    
T  11604162 tttattttaatatcccgcgttgtataaataatatcatctttaatgaaatgctataaacatctttcctt 11604095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 23508983 - 23508899
Alignment:
Q  178 gggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttattta 262  Q
    |||| ||||||  ||||||||||||||||| ||||| |||    |||||||||||||||||||||  ||||||||||||| ||||    
T  23508983 gggtggagtttgttaggcgacaagcaaatggggttgctcatgttcttgcaggagaagccacattacgagctagtcccgttgttta 23508899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 16416621 - 16416696
Alignment:
Q  191 taggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatttt 266  Q
    ||||||||||| ||||||||||| ||  |  ||||||||||| | ||||||| ||||||||| | |||||||||||    
T  16416621 taggcgacaagtaaatgaggttgctcgtattcttgcaggagatgtcacattactagctagtctcattatttatttt 16416696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 32719176 - 32719113
Alignment:
Q  362 atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagccttaga 425  Q
    ||||||| |||||||| ||||||| |||  || |||| || |||||||||||||||||||||||    
T  32719176 atattttgcacccctcaaagcctttcctttccttcccctctaaactcccaaacaaagccttaga 32719113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 187086 - 187132
Alignment:
Q  222 cttgcaggagaagccacattattagctagtcccgttatttattttaa 268  Q
    ||||||||||||||||||||  |||||||||  ||||||||||||||    
T  187086 cttgcaggagaagccacatttctagctagtcttgttatttattttaa 187132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 269
Target Start/End: Original strand, 16436474 - 16436579
Alignment:
Q  164 cttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttat 263  Q
    ||||||||||||| |||| |||||||   |||||||||||||||  |||| |||  | ||||||||||| |  |||||  ||| ||||||| ||||||||    
T  16436474 cttcacaaactcttgggtagagtttatccggcgacaagcaaatgcagttgctcatgcccttgcaggagatgtgacatttctagttagtcccattatttat 16436573  T
Q  264 tttaat 269  Q
    | ||||    
T  16436574 tataat 16436579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 17812245 - 17812306
Alignment:
Q  165 ttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgc 226  Q
    |||||||||||  |||| ||||||| |||| |||||||||||||||||| ||| | ||||||    
T  17812245 ttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgc 17812306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 21997638 - 21997683
Alignment:
Q  280 gtattaacaatatcatttttaatgaaatgctataaccatatttcct 325  Q
    ||||||| ||||||||||||||| ||||||||||| ||| ||||||    
T  21997638 gtattaaaaatatcatttttaataaaatgctataagcatgtttcct 21997683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 28551762 - 28551725
Alignment:
Q  384 ttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  28551762 ttcccttcccctcccctccaaactcccaaacaaagcct 28551725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 33132342 - 33132281
Alignment:
Q  165 ttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgc 226  Q
    |||||||||||  |||| ||||||| |||| |||||||||||||||||| ||| | ||||||    
T  33132342 ttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgc 33132281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 427
Target Start/End: Original strand, 2365776 - 2365812
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagccttagatt 427  Q
    |||||||| |||||||||||||||||||||| |||||    
T  2365776 cccctcccctccaaactcccaaacaaagcctaagatt 2365812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 162 - 254
Target Start/End: Complemental strand, 30449578 - 30449486
Alignment:
Q  162 cacttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtccc 254  Q
    ||||||||||||||   ||||||||||| || || ||||||||||||||| | ||||||  | ||||| |  |||||||||| | ||||||||    
T  30449578 cacttcacaaactcgaaggttgagtttaatatgcaacaagcaaatgaggtagctcacactttagcaggggttgccacattatcaactagtccc 30449486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 28 - 314
Target Start/End: Complemental strand, 21249842 - 21249556
Alignment:
Q  28 taagtgacatgcaacttgataatgtcgactttgagacggactctaaaaccacccatgacgcttttcactctcgtaaagacaatgtttccgaatttggaca 127  Q
    ||||||| |||||| |||||||||| ||||| | || ||| |||||||  ||  |||| |||||||| ||||  |||||| |  ||||||| ||||||||    
T  21249842 taagtgatatgcaatttgataatgtggacttcgcgatggattctaaaattacttatgatgcttttcattctcagaaagacgacatttccgagtttggaca 21249743  T
Q  128 aattatttcggcctatcattctctctttagtactcacttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgca 227  Q
     || |||||||| |  || || || ||    ||||||||||||||||||||||||||||| |||||||||||||| |||| ||  | |||  ||||||||    
T  21249742 tatcatttcggcttgccaatcccttttctccactcacttcacaaactctcgggttgagttcactaggcgacaagcgaatgcggcagctcatgcacttgca 21249643  T
Q  228 ggagaagccacattattagctagtcccgttatttattttaatccccctcgatgtattaacaatatcatttttaatgaaatgctataa 314  Q
    || || | ||| |  |||||||||||||| ||||||||||||   || || ||||| |||||||  || ||||||||||||||||||    
T  21249642 ggggaggtcacttctttagctagtcccgtcatttattttaatattccacgttgtataaacaatactatctttaatgaaatgctataa 21249556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 314
Target Start/End: Original strand, 5068362 - 5068514
Alignment:
Q  161 tcacttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatt 260  Q
    ||||||||||||||| ||| ||||||||||||  ||| ||||||||| | ||| || | | |||||||  || |||| |||||||| |||||||||||||    
T  5068362 tcacttcacaaactcgcgg-ttgagtttactaaacgataagcaaatgtgattgctctcgcgcttgcagaggaggccatattattaggtagtcccgttatt 5068460  T
Q  261 tattttaatccccctcgatgtattaacaatatcatttttaatgaaatgctataa 314  Q
    ||||||||| || |  | |||||||||||| | ||||| ||| |||||||||||    
T  5068461 tattttaatacctcgtgttgtattaacaatgttattttcaataaaatgctataa 5068514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 268
Target Start/End: Original strand, 13288087 - 13288184
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttattttaa 268  Q
    |||||| |||| |||||| ||||||||||| |||||| ||||| |||    |||||||||||||||| |||  |||||||||||||| ||||||||||    
T  13288087 aactctagggtggagtttgctaggcgacaaacaaatgcggttgctcatgtgcttgcaggagaagccatatttctagctagtcccgttgtttattttaa 13288184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 24065220 - 24065308
Alignment:
Q  178 gggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatttt 266  Q
    |||| ||||||  ||||||||||||||| ||||||| |||    ||||||||||||||||| ||| |||||||||||||| ||||||||    
T  24065220 gggtggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactagctagtcccgttgtttatttt 24065308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 41117189 - 41117272
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtccc 254  Q
    ||||||||||| ||||||  |||||||||||| |||||||||| |||  | |||||| |||||||||| ||| |||||||||||    
T  41117189 aactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatgctcttgcaagagaagccacgttactagctagtccc 41117272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 168 - 314
Target Start/End: Original strand, 35151207 - 35151353
Alignment:
Q  168 acaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatttta 267  Q
    ||||||||||| || ||||| |  |||||||||||||||| ||| | |||  | || |||||||||||| |||||| ||||||||||  ||||||||||     
T  35151207 acaaactctcgagtggagttcaacaggcgacaagcaaatgtggtggttcatgctctagcaggagaagccgcattatcagctagtcccactatttattttc 35151306  T
Q  268 atccccctcgatgtattaacaatatcatttttaatgaaatgctataa 314  Q
    ||  ||||   ||||||||| | || ||| |||||||||| ||||||    
T  35151307 atatccctgattgtattaacgacattattattaatgaaattctataa 35151353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 2909308 - 2909384
Alignment:
Q  349 tctattttctcctatatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagccttaga 425  Q
    |||||||| ||  ||||||| |||||||| ||||||| |||  || |||| ||||||||||||||||||||||||||    
T  2909308 tctattttttctcatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagccttaga 2909384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 424
Target Start/End: Complemental strand, 43036222 - 43036138
Alignment:
Q  340 aaagattgttctattttctcctatatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagccttag 424  Q
    ||||||| ||| |||||| | | ||||| ||||||| | ||||| | ||| |||||||| |||||||||||||||||||||||||    
T  43036222 aaagatttttcaattttcccttctatttctcaccccacaaagcccttccttcccctcccctccaaactcccaaacaaagccttag 43036138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 424
Target Start/End: Complemental strand, 49102878 - 49102790
Alignment:
Q  336 tgtgaaagattgttctattttctcctatatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagccttag 424  Q
    |||||||||||  || |||||  ||||||||| || |||| | ||||| | ||| |||||||| |||||||||||||||||||||||||    
T  49102878 tgtgaaagatttctcaatttttccctatatttctctccccccaaagcccttccttcccctcccctccaaactcccaaacaaagccttag 49102790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 254
Target Start/End: Original strand, 9928950 - 9929036
Alignment:
Q  168 acaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtccc 254  Q
    |||||||||||||| ||||| |  || |||||| |||||||||| | |||  | || ||||||||| ||||||||||||||||||||    
T  9928950 acaaactctcgggtagagttcaacagacgacaaacaaatgaggtggctcatgctctagcaggagaaaccacattattagctagtccc 9929036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 24083395 - 24083468
Alignment:
Q  191 taggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatt 264  Q
    |||||||||||| || | ||||| |||  |||||||| |||||||||| || ||||||||||||| ||||||||    
T  24083395 taggcgacaagccaacgcggttgctcatgcacttgcaagagaagccacgttcttagctagtcccgctatttatt 24083468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 37649517 - 37649434
Alignment:
Q  338 tgaaagattgttctattttctcct-atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    |||||||||  |||||||| |||| ||||||| |||||||| ||||||| |||  || |||| ||||||||||||||||||||||    
T  37649517 tgaaagatttctctatttt-tcctcatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 37649434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 421
Target Start/End: Original strand, 14439774 - 14439833
Alignment:
Q  362 atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    |||||||||||||||| ||| ||||| |  ||||||| ||||||||| ||||||||||||    
T  14439774 atatttttcacccctcaaagtcttccgtttccctcccctccaaactcgcaaacaaagcct 14439833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 424
Target Start/End: Original strand, 39508995 - 39509034
Alignment:
Q  385 tccctccccctcccatccaaactcccaaacaaagccttag 424  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  39508995 tcccttcccctcccctccaaactcccaaacaaagccttag 39509034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 426
Target Start/End: Original strand, 43572130 - 43572165
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagccttagat 426  Q
    |||||||| |||||||||||||||||||||||||||    
T  43572130 cccctcccctccaaactcccaaacaaagccttagat 43572165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 24427635 - 24427565
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacatt 241  Q
    |||||| |||| ||||||| |||||||||||| |||||||| | ||| || |||||| ||||| |||||||    
T  24427635 aactctagggtcgagtttattaggcgacaagccaatgaggtcgctcatactcttgcaagagaaaccacatt 24427565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 424
Target Start/End: Complemental strand, 34154239 - 34154153
Alignment:
Q  338 tgaaagattgttctattttctcctatatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagccttag 424  Q
    |||||||||  |||||||| ||  ||||||| |||||||| ||  ||| |||  || |||| |||||||||||||||||||||||||    
T  34154239 tgaaagatttctctattttttctcatattttgcacccctcaaaatctttcctttccttcccctccaaactcccaaacaaagccttag 34154153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 424
Target Start/End: Original strand, 50587260 - 50587298
Alignment:
Q  386 ccctccccctcccatccaaactcccaaacaaagccttag 424  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  50587260 cccttcccctcccttccaaactcccaaacaaagccttag 50587298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 896669 - 896702
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagccttag 424  Q
    |||||||| |||||||||||||||||||||||||    
T  896669 cccctcccctccaaactcccaaacaaagccttag 896702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 264
Target Start/End: Original strand, 9361767 - 9361860
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatt 264  Q
    |||||| |||| ||||||  |||||||||||| || | ||||| |||  |||||||| |||||||||| || ||| |||||| || ||||||||    
T  9361767 aactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagagaagccacgttcttaactagtctcgctatttatt 9361860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 17431166 - 17431227
Alignment:
Q  165 ttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgc 226  Q
    |||||||||||  |||| ||||||| |||| |||||||||||||||||| ||| | ||||||    
T  17431166 ttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgc 17431227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 425
Target Start/End: Original strand, 17675418 - 17675451
Alignment:
Q  392 ccctcccatccaaactcccaaacaaagccttaga 425  Q
    ||||||| ||||||||||||||||||||||||||    
T  17675418 ccctcccctccaaactcccaaacaaagccttaga 17675451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 18122722 - 18122807
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgt 256  Q
    ||||||||||| ||||||| ||||||||||   |||| ||| | |||||| || ||  |||| |||||||||||||||||| ||||    
T  18122722 aactctcgggtggagtttattaggcgacaaatcaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgt 18122807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 424
Target Start/End: Complemental strand, 24369139 - 24369078
Alignment:
Q  363 tatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagccttag 424  Q
    |||||| |||||||| ||| ||||||| || ||||| || |||||| |||||||||||||||    
T  24369139 tattttgcacccctcaaagtcttcccttcctctcccctctaaactcacaaacaaagccttag 24369078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 424
Target Start/End: Original strand, 36887074 - 36887135
Alignment:
Q  363 tatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagccttag 424  Q
    |||||| |||||||| ||| ||| ||| ||||| || ||||||||| |||||||||||||||    
T  36887074 tattttccacccctcaaagtctttccttccccttccctccaaactcgcaaacaaagccttag 36887135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 419
Target Start/End: Complemental strand, 37875653 - 37875572
Alignment:
Q  338 tgaaagattgttctattttctcctatatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagc 419  Q
    ||||||||| ||| ||||||||  |||||||||||||||| || | || ||  |||||||  ||||||||| ||||||||||    
T  37875653 tgaaagatttttccattttctctcatatttttcacccctcaaaacatttccctcccctcctctccaaactcgcaaacaaagc 37875572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 44002249 - 44002310
Alignment:
Q  165 ttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgc 226  Q
    |||||||||||  |||| ||||||| |||| |||||||||||||||||| ||| | ||||||    
T  44002249 ttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgc 44002310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 420
Target Start/End: Complemental strand, 52073333 - 52073249
Alignment:
Q  336 tgtgaaagattgttctattttctcctatatttttcacccctcga-agccttccctccccctcccatccaaactcccaaacaaagcc 420  Q
    ||||||||||| | | |||||| |||||||||  || ||||| | |||||||||| ||||||||  ||||||||||||||||||||    
T  52073333 tgtgaaagattttacaattttcccctatatttc-caaccctccagagccttcccttcccctccccaccaaactcccaaacaaagcc 52073249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 18984798 - 18984750
Alignment:
Q  165 ttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttg 213  Q
    ||||||||||||||||| ||||||| | || |||||||| |||||||||    
T  18984798 ttcacaaactctcgggtggagtttattcggagacaagcagatgaggttg 18984750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 314
Target Start/End: Original strand, 26618074 - 26618162
Alignment:
Q  226 caggagaagccacattattagctagtcccgttatttattttaatccccctcgatgtattaacaatatcatttttaatgaaatgctataa 314  Q
    |||||||| |||||||||  |||||||||  |||||||||| ||  ||||   ||||||||| | || ||| |||||||||||||||||    
T  26618074 caggagaaaccacattatcggctagtcccactatttattttcatatccctgattgtattaacgacattattattaatgaaatgctataa 26618162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 424
Target Start/End: Original strand, 47905869 - 47905901
Alignment:
Q  392 ccctcccatccaaactcccaaacaaagccttag 424  Q
    ||||||| |||||||||||||||||||||||||    
T  47905869 ccctcccctccaaactcccaaacaaagccttag 47905901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 30 - 323
Target Start/End: Original strand, 13574580 - 13574873
Alignment:
Q  30 agtgacatgcaacttgataatgtcgactttgagacggactctaaaaccacccatgacgcttttcactctcgtaaagacaatgtttccgaatttggacaaa 129  Q
    ||||| |||||||| ||||| |  || ||||||||||| ||||||||||| ||||| ||||||||  ||| ||||||  |||| || ||||| |  || |    
T  13574580 agtgatatgcaactcgataacgatgattttgagacggattctaaaaccacgcatgatgcttttcatgctcataaagatgatgtctctgaattcgagcata 13574679  T
Q  130 ttatttcggcctatcattctctctttagtactcacttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcagg 229  Q
    |||| ||||| | ||  |||||||| |  |  |  || ||||||||| |||||||||||||| | ||||||||||||||||||| |||| |  | ||  |    
T  13574680 ttatctcggcttgtcgatctctcttcaacaaccttttaacaaactcttgggttgagtttactcgacgacaagcaaatgaggttgctcacgctttggccag 13574779  T
Q  230 agaagccacattattagctagtcccgttatttattttaatccccctcgatgtattaacaatatcatttttaatgaaatgctataaccatatttc 323  Q
     ||||| || || | ||| |||||| ||||||||||||||||||| |  ||||| |||||||| || |||||||||||||||| | ||||||||    
T  13574780 tgaagctaccttgtcagccagtcccattatttattttaatcccccgcattgtataaacaatattatctttaatgaaatgctatgagcatatttc 13574873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 28 - 268
Target Start/End: Complemental strand, 20476843 - 20476603
Alignment:
Q  28 taagtgacatgcaacttgataatgtcgactttgagacggactctaaaaccacccatgacgcttttcactctcgtaaagacaatgtttccgaatttggaca 127  Q
    ||||||| |||||| |||||||||| ||||| | || ||| |||||||  ||  |||| |||||||||||||  ||||||    ||| ||| ||||||||    
T  20476843 taagtgatatgcaatttgataatgtggacttcgcgatggattctaaaattacttatgatgcttttcactctcagaaagacggcattttcgagtttggaca 20476744  T
Q  128 aattatttcggcctatcattctctctttagtactcacttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgca 227  Q
     ||||||||||| |  || || || ||    |||||||||||||| |||||||||||||| |||||||||||||| |||| ||  | |||  |||||| |    
T  20476743 tattatttcggcttgccaatcccttttctccactcacttcacaaattctcgggttgagttcactaggcgacaagcgaatgcggcagctcatgcacttgta 20476644  T
Q  228 ggagaagccacattattagctagtcccgttatttattttaa 268  Q
    || || ||||| |  |||||||||||||| |||||||||||    
T  20476643 ggggaggccacttctttagctagtcccgtcatttattttaa 20476603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 423
Target Start/End: Complemental strand, 38568256 - 38568195
Alignment:
Q  362 atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcctta 423  Q
    ||||||| ||||||||||||||||||| ||||| ||  ||||||||| ||||||||||||||    
T  38568256 atattttccacccctcgaagccttcccccccccccctctccaaactcgcaaacaaagcctta 38568195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 425
Target Start/End: Original strand, 10843214 - 10843301
Alignment:
Q  338 tgaaagattgttctattttctcct-atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagccttaga 425  Q
    |||||||||  |||||||| |||| ||||||| |||||||| ||||||| |||| || |||| |||||||||||||||||||| |||||    
T  10843214 tgaaagatttctctatttt-tcctcatattttgcacccctcaaagcctttcctctccttcccctccaaactcccaaacaaagcattaga 10843301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 2157917 - 2157822
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatttt 266  Q
    ||||||||||| ||||||  |||||||||||| || ||| ||| | |  | |||||| |||||||||| ||| |||||||||||||| ||||||||    
T  2157917 aactctcgggtggagtttgttaggcgacaagccaacgagattgcttatgctcttgcaagagaagccacgttactagctagtcccgttgtttatttt 2157822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 36044937 - 36045000
Alignment:
Q  191 taggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtccc 254  Q
    |||||||||||| |||||||||| ||| |  |||| |||||||||||||||| |||||||||||    
T  36044937 taggcgacaagccaatgaggttgctcatattcttgtaggagaagccacattactagctagtccc 36045000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 425
Target Start/End: Original strand, 39649751 - 39649838
Alignment:
Q  338 tgaaagattgttctattttctcct-atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagccttaga 425  Q
    |||||||||  |||||||| |||| ||||||| |||||||| ||||||| |||  || |||| |||||||| |||||||||||||||||    
T  39649751 tgaaagatttctctatttt-tcctcatattttgcacccctcaaagccttacctttccttcccctccaaactaccaaacaaagccttaga 39649838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 425
Target Start/End: Complemental strand, 4841556 - 4841522
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagccttaga 425  Q
    |||||||| ||||||||||||||||||||||||||    
T  4841556 cccctcccctccaaactcccaaacaaagccttaga 4841522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 421
Target Start/End: Complemental strand, 9684651 - 9684609
Alignment:
Q  379 aagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    ||||||||||| ||| |||| ||||||||||||||||||||||    
T  9684651 aagccttcccttcccttcccctccaaactcccaaacaaagcct 9684609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 19237666 - 19237708
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttg 213  Q
    |||||| |||| ||||||| |||||||||||||||||||||||    
T  19237666 aactctagggtggagtttattaggcgacaagcaaatgaggttg 19237708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 36962040 - 36961983
Alignment:
Q  163 acttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacac 220  Q
    |||| ||||||||||  |||||||||| |||| | |||||||||||||||| ||||||    
T  36962040 acttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacac 36961983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 42765280 - 42765337
Alignment:
Q  163 acttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacac 220  Q
    |||| ||||||||||  |||||||||| |||| | |||||||||||||||| ||||||    
T  42765280 acttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacac 42765337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 424
Target Start/End: Original strand, 4649157 - 4649189
Alignment:
Q  392 ccctcccatccaaactcccaaacaaagccttag 424  Q
    ||||||| |||||||||||||||||||||||||    
T  4649157 ccctcccctccaaactcccaaacaaagccttag 4649189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 6783310 - 6783354
Alignment:
Q  168 acaaactctcgggttgagtttactaggcgacaagcaaatgaggtt 212  Q
    ||||||||| |||| ||||||| ||||||||||||||||| ||||    
T  6783310 acaaactctagggtggagtttaataggcgacaagcaaatgtggtt 6783354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 11123600 - 11123648
Alignment:
Q  165 ttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttg 213  Q
    |||||||||||  |||| ||||||| |||| ||||||||||||||||||    
T  11123600 ttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttg 11123648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 19741650 - 19741586
Alignment:
Q  191 taggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccg 255  Q
    |||||||||||| || | ||||| |||  | |||||| |||||||||||||| ||||||||||||    
T  19741650 taggcgacaagctaacggggttgctcatgctcttgcaagagaagccacattactagctagtcccg 19741586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 20476411 - 20476363
Alignment:
Q  279 tgtattaacaatatcatttttaatgaaatgctataaccatatttccttc 327  Q
    ||||| |||||||| || |||||||||||||||||| ||| ||||||||    
T  20476411 tgtataaacaatattatctttaatgaaatgctataagcatctttccttc 20476363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 423
Target Start/End: Complemental strand, 35700962 - 35700930
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagcctta 423  Q
    |||||||| ||||||||||||||||||||||||    
T  35700962 cccctcccctccaaactcccaaacaaagcctta 35700930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 28 - 327
Target Start/End: Original strand, 42331615 - 42331915
Alignment:
Q  28 taagtgacatgcaacttgataatgtcgactttgagacggactctaaaaccacccatgacgcttttcactctcgtaaagacaatgtttccgaatttggaca 127  Q
    ||||||| |||||| |||| ||||| ||||||| |||||| || ||||  ||| |||| || |||||||||| ||||||  | || || || ||||||||    
T  42331615 taagtgatatgcaatttgacaatgtagactttgcgacggattcaaaaattacctatgatgcctttcactctcataaagatgacgtctctgagtttggaca 42331714  T
Q  128 aattatttcggcctatcattctctctttagtactcacttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgca 227  Q
     || ||||| |||| |||  |||||||    |||||||| ||||| |||||||||||||| |||||||||||||| |||| ||  | |||  ||||||||    
T  42331715 tatcatttcagcctgtcaagctctcttctccactcactttacaaattctcgggttgagttcactaggcgacaagcgaatgcggcagctcatgcacttgca 42331814  T
Q  228 ggagaagccacattattagctagtcccgttatttattttaatccccctcgatgtattaac-aatatcatttttaatgaaatgctataaccatatttcctt 326  Q
     | || ||||| |  ||||| |||||||| ||||||||||||   || |  ||||| ||| |||||||| |||||||||||| ||||| ||| |||||||    
T  42331815 agggaggccacttctttagccagtcccgtcatttattttaatattccgcattgtataaacaaatatcatctttaatgaaatgttataagcatctttcctt 42331914  T
Q  327 c 327  Q
    |    
T  42331915 c 42331915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 38815972 - 38815790
Alignment:
Q  30 agtgacatgcaacttgataatgtcgactttgagacggactctaaaaccacccatgacgcttttcactctcgtaaagacaatgtttccgaatttggacaaa 129  Q
    ||||| ||||||||  ||||||| || ||||||||||| ||||||||||| ||||| ||||||||  ||| ||||||  |||| || ||||| || || |    
T  38815972 agtgatatgcaactcaataatgttgattttgagacggattctaaaaccactcatgatgcttttcatgctcataaagatgatgtctctgaattcgggcata 38815873  T
Q  130 ttatttcggcctatcattctctctttagtactcacttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggtt 212  Q
    | || || || | ||  ||||| || |  |  || || |||||||||||||||||||||||| ||||||||||||||||||||    
T  38815872 tcatctcagcttgtcgatctcttttcaacaaccatttaacaaactctcgggttgagtttactcggcgacaagcaaatgaggtt 38815790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 42775034 - 42774960
Alignment:
Q  240 ttattagctagtcccgttatttattttaatccccctcgatgtattaacaatatcatttttaatgaaatgctataa 314  Q
    |||| |||||||||| ||||||||||||||||||| |  | ||| |||||||| |||||||||||||||||||||    
T  42775034 ttatcagctagtcccattatttattttaatcccccacattatataaacaatattatttttaatgaaatgctataa 42774960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 423
Target Start/End: Complemental strand, 38136735 - 38136650
Alignment:
Q  338 tgaaagattgttctattttctcctatatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcctta 423  Q
    |||||||||  ||||||||| |  ||||||| |||||||| ||||||| ||| ||| |||| ||||||||||||||||||||||||    
T  38136735 tgaaagatttctctattttccctcatattttgcacccctcaaagcctttccttcccttcccctccaaactcccaaacaaagcctta 38136650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 360 - 424
Target Start/End: Original strand, 35959369 - 35959433
Alignment:
Q  360 ctatatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagccttag 424  Q
    ||||||||| |||||| | ||||||| ||| |||||||| |||||||||||||||||||||||||    
T  35959369 ctatattttccaccccccaaagcctttcctacccctcccctccaaactcccaaacaaagccttag 35959433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 423
Target Start/End: Complemental strand, 29114144 - 29114059
Alignment:
Q  338 tgaaagattgttctattttctcct-atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcctta 423  Q
    |||||||||  |||||||| |||| ||||||| |||||||| ||||||| |||  || |||| ||||||||||||||||||||||||    
T  29114144 tgaaagatttctctatttt-tcctcatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcctta 29114059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 28860789 - 28860874
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgt 256  Q
    ||||||||||| ||||||  |||||||||||| |||| ||| | |||||| || ||  |||| |||||||||||||||||| ||||    
T  28860789 aactctcgggtggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgt 28860874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 423
Target Start/End: Original strand, 55510112 - 55510169
Alignment:
Q  366 ttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcctta 423  Q
    |||||| || || ||||||||| | |||||||| ||||||||||||||||||||||||    
T  55510112 ttttcatccttcaaagccttccattcccctcccctccaaactcccaaacaaagcctta 55510169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 421
Target Start/End: Complemental strand, 22165643 - 22165584
Alignment:
Q  362 atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    ||||||| |||| ||| ||||||||||| || ||||| ||||||||| ||||||||||||    
T  22165643 atattttccacctctcaaagccttcccttcctctcccctccaaactcacaaacaaagcct 22165584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 27066680 - 27066585
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatttt 266  Q
    |||||| |||| ||||||  |||||||||||| |||| ||| |||||||| ||||||   |||||||||||  | |||||||||| ||| ||||||    
T  27066680 aactctagggtggagtttgttaggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctatttt 27066585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 27066874 - 27066779
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatttt 266  Q
    |||||| |||| ||||||  |||||||||||| |||| ||| |||||||| ||||||   |||||||||||  | |||||||||| ||| ||||||    
T  27066874 aactctagggtggagtttgttaggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctatttt 27066779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 27087587 - 27087492
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatttt 266  Q
    |||||| |||| ||||||  |||||||||||| |||| ||| |||||||| ||||||   |||||||||||  | |||||||||| ||| ||||||    
T  27087587 aactctagggtggagtttgttaggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctatttt 27087492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 421
Target Start/End: Original strand, 33500725 - 33500784
Alignment:
Q  362 atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    ||||||| |||||||| ||||||| |||  || |||| ||||||||||||||||||||||    
T  33500725 atattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 33500784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 38815783 - 38815716
Alignment:
Q  257 tatttattttaatccccctcgatgtattaacaatatcatttttaatgaaatgctataaccatatttcc 324  Q
    |||||||||||||||||| |  ||||| |||| ||| || |||||||||||||||||| ||| |||||    
T  38815783 tatttattttaatcccccacattgtataaacagtattatctttaatgaaatgctataagcatctttcc 38815716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 423
Target Start/End: Original strand, 42650810 - 42650897
Alignment:
Q  336 tgtgaaagattgttctattttctcctatatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcctta 423  Q
    |||||||||||  || |||||  ||||||||| ||||||| | ||||| | ||| ||| |||| ||||||||| ||||||||||||||    
T  42650810 tgtgaaagatttatcaatttttccctatatttctcaccccccaaagcccttccttcccttcccctccaaactcacaaacaaagcctta 42650897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 54027842 - 54027747
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatttt 266  Q
    |||||| |||| ||||||  |||||||||||| |||| ||| | |||||| |||| ||| |||||||||||  | |||| ||||| ||||||||||    
T  54027842 aactctagggtggagttttttaggcgacaagctaatgtggtggctcacactcttgtaggggaagccacatttctcgctactcccgctatttatttt 54027747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 266
Target Start/End: Original strand, 26949224 - 26949322
Alignment:
Q  168 acaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatttt 266  Q
    ||||||||| |||| |||||| ||| |||||||||||||| ||  | |||  | ||||||||||| || |||||  |||||||||| |||| |||||||    
T  26949224 acaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagtcctgttacttatttt 26949322  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 425
Target Start/End: Complemental strand, 38365931 - 38365897
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagccttaga 425  Q
    |||||||| ||||||||||||||||||||||||||    
T  38365931 cccctcccctccaaactcccaaacaaagccttaga 38365897  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 425
Target Start/End: Complemental strand, 41844344 - 41844310
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagccttaga 425  Q
    |||||||| ||||||||||||||||||||||||||    
T  41844344 cccctcccctccaaactcccaaacaaagccttaga 41844310  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 421
Target Start/End: Original strand, 48620481 - 48620543
Alignment:
Q  359 cctatatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    ||||||||| || |||| | ||||||| ||| |||||||| ||||||||| ||||||||||||    
T  48620481 cctatatttctctccccccaaagcctttccttcccctcccctccaaactcgcaaacaaagcct 48620543  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 368290 - 368327
Alignment:
Q  382 ccttccctccccctcccatccaaactcccaaacaaagc 419  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  368290 ccttcccttcccctcccctccaaactcccaaacaaagc 368327  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 30198672 - 30198588
Alignment:
Q  338 tgaaagattgttctattttctcct-atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcctt 422  Q
    |||||||||  |||||||| |||| ||||||| |||||||| ||||||| |||  || |||  |||||||||||||||||||||||    
T  30198672 tgaaagatttctctatttt-tcctcatattttgcacccctcaaagcctttcctttccttcctctccaaactcccaaacaaagcctt 30198588  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 264
Target Start/End: Original strand, 34301809 - 34301902
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatt 264  Q
    ||||||||||| |||||   |||||||||| |||||| ||| | ||| |  ||||||  ||| ||||||||| ||||||||||||||| |||||    
T  34301809 aactctcgggtggagttcgttaggcgacaaacaaatgcggtagctcataatcttgcaaaagaggccacattaatagctagtcccgttacttatt 34301902  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 268
Target Start/End: Complemental strand, 37061189 - 37061092
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttattttaa 268  Q
    |||||| |||| |||||| ||||| ||||| |||||| ||||| |||    |||||| |||||||||  ||  |||||||||||||| ||||||||||    
T  37061189 aactctagggtggagtttgctaggtgacaaacaaatgtggttgctcatgtgcttgcaagagaagccatgtttctagctagtcccgttgtttattttaa 37061092  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 425
Target Start/End: Original strand, 48830985 - 48831018
Alignment:
Q  392 ccctcccatccaaactcccaaacaaagccttaga 425  Q
    ||||||| ||||||||||||||||||||||||||    
T  48830985 ccctcccctccaaactcccaaacaaagccttaga 48831018  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 423
Target Start/End: Complemental strand, 904104 - 904072
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagcctta 423  Q
    |||||||| ||||||||||||||||||||||||    
T  904104 cccctcccctccaaactcccaaacaaagcctta 904072  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 32948696 - 32948728
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagcctta 423  Q
    |||||||| ||||||||||||||||||||||||    
T  32948696 cccctcccttccaaactcccaaacaaagcctta 32948728  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 42777161 - 42777121
Alignment:
Q  379 aagccttccctccccctcccatccaaactcccaaacaaagc 419  Q
    ||||||||| ||||| |||||| ||||||||||||||||||    
T  42777161 aagccttccatccccttcccattcaaactcccaaacaaagc 42777121  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 159 - 314
Target Start/End: Complemental strand, 41290315 - 41290161
Alignment:
Q  159 actcacttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgtta 258  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| |||| ||  | ||   ||||||| |||||  |||| |  |||| ||||||||| |    
T  41290315 actcacttcacgaactctcgggttgagttcactaggcgacaagcgaatgcggcagctcgtgcacttgc-ggagagaccacttctttagttagtcccgtca 41290217  T
Q  259 tttattttaatccccctcgatgtattaacaatatcatttttaatgaaatgctataa 314  Q
     ||||||||||  ||| || ||||| |||||||| || ||||||||||||||||||    
T  41290216 cttattttaatatcccgcgttgtataaacaatattatctttaatgaaatgctataa 41290161  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 42080464 - 42080559
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatttt 266  Q
    ||||||||||| |||||| ||||| |||||||||||| | ||| ||| || |||||||||||  |||||||  |||| | ||||||| ||||||||    
T  42080464 aactctcgggtggagtttgctaggagacaagcaaatgtgattgctcatactcttgcaggagagaccacatttgtagccaatcccgttgtttatttt 42080559  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 79497 - 79439
Alignment:
Q  362 atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcc 420  Q
    ||||||| ||| |||| ||||||||||| |||||||| ||||||||| |||||||||||    
T  79497 atattttccactcctcaaagccttcccttcccctcccctccaaactcgcaaacaaagcc 79439  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 363 - 424
Target Start/End: Original strand, 29584379 - 29584440
Alignment:
Q  363 tatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagccttag 424  Q
    |||||| |||||||| ||||||| ||| ||||| || ||||||||| |||||||||||||||    
T  29584379 tattttccacccctcaaagcctttccttccccttccctccaaactcgcaaacaaagccttag 29584440  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 12506097 - 12506014
Alignment:
Q  338 tgaaagattgttctattttctcctatatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcct 421  Q
    |||||||||  || ||||| || |||||||| |||||||| || ||||| || |||||||| |||||| || ||||||||||||    
T  12506097 tgaaagatttctccattttttcttatattttccacccctcaaaaccttctcttcccctcccctccaaattcgcaaacaaagcct 12506014  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 264
Target Start/End: Complemental strand, 13811767 - 13811668
Alignment:
Q  165 ttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatt 264  Q
    |||||||||||| |||||||||||| |||||||||||| |||| ||  | |||  |  | ||| |||||||||| |  ||||||||||||| ||||||||    
T  13811767 ttcacaaactctagggttgagtttattaggcgacaagcgaatgcggcggctcatgctttagcaagagaagccacttccttagctagtcccgatatttatt 13811668  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 26932001 - 26931906
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatttt 266  Q
    |||||| |||| ||||||  ||||| |||||| ||||| |||| |||    ||||||||||||||||||||| ||||||||| ||  |||||||||    
T  26932001 aactctagggtagagtttgttaggcaacaagccaatgaagttgttcatgttcttgcaggagaagccacattactagctagtctcgccatttatttt 26931906  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 19382794 - 19382756
Alignment:
Q  164 cttcacaaactctcgggttgagtttactaggcgacaagc 202  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  19382794 cttcacaaactctagggttgagtttattaggcgacaagc 19382756  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 424
Target Start/End: Original strand, 34336234 - 34336296
Alignment:
Q  362 atatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagccttag 424  Q
    ||||||| |||||||| ||| ||||| | | |||||| ||||||||| |||||||||||||||    
T  34336234 atattttccacccctcaaagtcttccattctcctcccctccaaactcacaaacaaagccttag 34336296  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 3404752 - 3404785
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagccttag 424  Q
    |||||||| |||||||||||||||||||||||||    
T  3404752 cccctcccctccaaactcccaaacaaagccttag 3404785  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 14848480 - 14848419
Alignment:
Q  165 ttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgc 226  Q
    |||||||||||  |||| ||||||| |||| |||||||||||||||||| ||| | ||||||    
T  14848480 ttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgc 14848419  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 40796574 - 40796631
Alignment:
Q  197 acaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtccc 254  Q
    ||||||||||| ||||| ||| ||||||||  |||| ||||| |||||||||||||||    
T  40796574 acaagcaaatgtggttgctcatacacttgctagagatgccactttattagctagtccc 40796631  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 953721 - 953765
Alignment:
Q  222 cttgcaggagaagccacattattagctagtcccgttatttatttt 266  Q
    ||||||||||||| ||| ||| |||||||||||||| ||||||||    
T  953721 cttgcaggagaagtcacgttactagctagtcccgttgtttatttt 953765  T

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Target: scaffold0128 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 26572 - 26645
Alignment:
Q  349 tctattttctcctatatttttcacccctcgaagccttccctccccctcccatccaaactcccaaacaaagcctt 422  Q
    |||||||| ||  ||||||| |||||||| ||||||| |||  || |||| |||||||||||||||||||||||    
T  26572 tctattttttctcatattttgcacccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcctt 26645  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 73478 - 73387
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttattta 262  Q
    ||||||||||| |||||| ||| | |||||||||||| ||||| | | ||||| ||||||||  |||| ||  |||||||||||||| ||||    
T  73478 aactctcgggtggagtttgctaagagacaagcaaatgtggttgctgatacactcgcaggagagaccacgtttctagctagtcccgttgttta 73387  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 191144 - 191051
Alignment:
Q  171 aactctcgggttgagtttactaggcgacaagcaaatgaggttggtcacacacttgcaggagaagccacattattagctagtcccgttatttatt 264  Q
    |||||| |||| ||||||  |||||||||||| || | ||||| |||  |||||||| || ||||||| || ||| ||||||||| ||||||||    
T  191144 aactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagaaaagccacgttcttaactagtcccgctatttatt 191051  T

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Target: scaffold0632 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 423
Target Start/End: Complemental strand, 1924 - 1892
Alignment:
Q  391 cccctcccatccaaactcccaaacaaagcctta 423  Q
    |||||||| ||||||||||||||||||||||||    
T  1924 cccctcccttccaaactcccaaacaaagcctta 1892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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