View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16731_high_9 (Length: 465)
Name: NF16731_high_9
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16731_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 8 - 450
Target Start/End: Complemental strand, 2796181 - 2795739
Alignment:
| Q |
8 |
agataatactgcaactcactatggccagtaacaacaattccctcaccacatgagtcatactgtggccttccggcacgacccaacatctgcatcacatcaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2796181 |
agataatactgcaactcactatggccagtaacaacaattcccataccacatgagtcatactgtggccttccggcacgacccaacatctgcatcacatcaa |
2796082 |
T |
|
| Q |
108 |
gaggactcaattcagtccatgctcccttttcaggattataaatctttgtccctttaattataaccgtatgagccgggagattcacaccccaggcaagggt |
207 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2796081 |
gaggactcaattcagtccatgctcctctttcaggattataaatctttgtccctttaattataaccgtatgagccgggagattcacaccccaggcaagggt |
2795982 |
T |
|
| Q |
208 |
agcagtggataccaaaacttgaacatgtccagaagcgaaaagatcctcaacgagctggcgatctgttcttgtcataccagcatgatgaatagcaaaacca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2795981 |
agcagtggataccaaaacttgaacatgtccagaagcaaaaagatcctcaacgagctggcgatctgttcttgtcataccagcatgatgaatagcaaaacca |
2795882 |
T |
|
| Q |
308 |
tatggcagaagatctttgagatcattgctcttcacaagatcggtatgactatgaagaatctcacggcttgcactatcttctttaaggaacctaccaagag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2795881 |
tatggcagaagatctttgagatcattgctcttcacaagatcggtatgactatgaagaatctcacggcttgcactatcttctttaaggaacctaccaagag |
2795782 |
T |
|
| Q |
408 |
tgtcatttgcaagtgcagtatctctgatggctcttgctgtttt |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2795781 |
tgtcatttgcaagtgcagtatctctgatggctcttgctgtttt |
2795739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 450
Target Start/End: Complemental strand, 29263691 - 29263252
Alignment:
| Q |
11 |
taatactgcaactcactatggccagtaacaacaattccctcaccacatgagtcatactgtggccttccggcacgacccaacatctgcatcacatcaagag |
110 |
Q |
| |
|
||||| ||||||||||| ||||| |||| || ||||||||||||| | |||||||| || ||||||||||||||||||||||||||||| || ||||| | |
|
|
| T |
29263691 |
taatattgcaactcactgtggcccgtaagaataattccctcaccataagagtcatattgaggccttccggcacgacccaacatctgcataacgtcaagtg |
29263592 |
T |
|
| Q |
111 |
gactcaattcagtccatgctcccttttcaggattataaatctttgtccctttaattataaccgtatgagccgggagattcacaccccaggcaagggtagc |
210 |
Q |
| |
|
|||||| ||||||||| || |||||||| ||||||||||||| |||||||||||||||||| || ||||| || |||||||||||||| |||||||| || |
|
|
| T |
29263591 |
gactcagttcagtccaggcccccttttcgggattataaatctgtgtccctttaattataacagtgtgagctggaagattcacaccccatgcaagggtggc |
29263492 |
T |
|
| Q |
211 |
agtggataccaaaacttgaacatgtccagaagcgaaaagatcctcaacgagctggcgatctgttcttgtcataccagcatgatgaatagcaaaaccatat |
310 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| ||||||||||| || ||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
29263491 |
agtggataccaaaacttgagcatgtccatcagcgaacagatcctcaacaagttggcgatctgtcctcgtcataccagcatgatgaatagcaaaaccatac |
29263392 |
T |
|
| Q |
311 |
ggcagaagatctttgagatcattgctcttcacaagatcggtatgactatgaagaatctcacggcttgcactatcttctttaaggaacctaccaagagtgt |
410 |
Q |
| |
|
|||||||||||||| || ||| | |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29263391 |
ggcagaagatctttaaggtcactactcttcacaagatcagtatgagtatgaagaatctcacggcttgcactatcttctttaaggaacctaccaagagtat |
29263292 |
T |
|
| Q |
411 |
catttgcaagtgcagtatctctgatggctcttgctgtttt |
450 |
Q |
| |
|
||| ||| ||||||| ||||||||||||||| || ||||| |
|
|
| T |
29263291 |
catctgcgagtgcagcatctctgatggctctagcagtttt |
29263252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University