View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16731_low_1 (Length: 1001)
Name: NF16731_low_1
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16731_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 37937657 - 37937245
Alignment:
| Q |
1 |
ttaccctcttgctacttacctcgccacccgttacaatcgtgcacatgttattgctcttggtgcttttctttgggctgccgctacgttcctcgttgccatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37937657 |
ttaccctcttgctacttacctcgccacccgttacaatcgttcacatgttattgctcttggtgcttttctttgggctgccgctacgttcctcgttgccatc |
37937558 |
T |
|
| Q |
101 |
tcatccacctttttacaggtcttcatttctattt------tactcnnnnnnnc-gtcgttaattggtttctgaacaactattttggtctctcaacgtgtg |
193 |
Q |
| |
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||||| |||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37937557 |
tcatctacctttttacaggtcttcatttctatttctgttttactctttttttccgtcgttaattggtttctgaacaactattttggtctctcaacgtgtg |
37937458 |
T |
|
| Q |
194 |
tgatgtcttgtcattatagtttttt-agtgtatccaaattaaaattactgacacatactcagtggtgtctccataggcggtcattttggttctcgaatat |
292 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37937457 |
tgatgtgttgtcattatagtttttttagtgtatccaaattaaaattactaacatatactcggtggtgtctccataggcggtcattttggttctcgaatat |
37937358 |
T |
|
| Q |
293 |
gtcttctgttgatcattttagtcattagatgtgtttttccgttagtcgatatagtccataaaattacacacaaaagagacaacgggggtgtattttcgat |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37937357 |
gtcttctgttgatcattttagtcattagatgtgtttttccgttagtcgatatagtccataaaattacacacaaaagagacaacgggggtgtatttgcgat |
37937258 |
T |
|
| Q |
393 |
tttgatatgttta |
405 |
Q |
| |
|
||||||||||||| |
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|
| T |
37937257 |
tttgatatgttta |
37937245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 451 - 767
Target Start/End: Complemental strand, 37937250 - 37936933
Alignment:
| Q |
451 |
tgtttactctaattgaagtgctagctggaattagttgaactgttgaagttagttctatatagttgaagtcttaaaataagttgaagttagttctagataa |
550 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37937250 |
tgtttactctaattgaagtgctagctagaattagttgaactgttgaagttagttctatatagttgaagtcttaaaataagttgaagttagttctagataa |
37937151 |
T |
|
| Q |
551 |
ttgcaagttggttgcttttatttacaatttagttatgatttgttagtttagttagcatcactatataaaatcagcttttgtattctgtcaattataaata |
650 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37937150 |
ttgcaagttggttgcttttaattacaatttagttatgatttgttagtttagttagcatcactatataaaatcagcttttgtattctgtcaattataaata |
37937051 |
T |
|
| Q |
651 |
atcannnnnnnctcaattgtcgtggtctgtctagaagaatctcccaaagctattatcagaacttattatgctta-ttttttaacagacacaaacatacaa |
749 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37937050 |
atcatttttttatcaattgtcgtggtctgtctagaagaatctcccaaagctattatcagaacttattatgcttatttttttaacagacacaaacatacaa |
37936951 |
T |
|
| Q |
750 |
ccaaaatacatagcttac |
767 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
37936950 |
ccaaaatacatagcttac |
37936933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 864 - 996
Target Start/End: Complemental strand, 37936937 - 37936805
Alignment:
| Q |
864 |
cttacaagtcagttagtggttgttagtaggtagttaatcatttttaatcaatttaatatttttcttaatatgaagcatcgtgggtatcaatatgctttct |
963 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
37936937 |
cttacaagtcagttagtggttgttagtaggtagttaatcatttttaatcaatttaatatttttcttaatatgaagcatcgtgggtatcgatatgctttct |
37936838 |
T |
|
| Q |
964 |
accttttgtatgcctatgattttcttccctttg |
996 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
37936837 |
gccttttgtatgcctatgattttcttccctttg |
37936805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 37922383 - 37922264
Alignment:
| Q |
1 |
ttaccctcttgctacttacctcgccacccgttacaatcgtgcacatgttattgctcttggtgcttttctttgggctgccgctacgttcctcgttgccatc |
100 |
Q |
| |
|
||||||||||||| ||||||| ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
37922383 |
ttaccctcttgctgcttaccttgccacacgacacaatcgtgcacatgtcattgctcttggtgcttttctttgggctgccgctacattcctcgttgctgtc |
37922284 |
T |
|
| Q |
101 |
tcatccacctttttacaggt |
120 |
Q |
| |
|
|| |||||||| || ||||| |
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|
| T |
37922283 |
tcctccaccttcttgcaggt |
37922264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 37925966 - 37925847
Alignment:
| Q |
1 |
ttaccctcttgctacttacctcgccacccgttacaatcgtgcacatgttattgctcttggtgcttttctttgggctgccgctacgttcctcgttgccatc |
100 |
Q |
| |
|
||||||||| ||| ||||||| ||||| || ||||||||||||||||||||||||| |||||||||||||||||||| || || |||||||| |||||| |
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|
| T |
37925966 |
ttaccctctggctgcttacctggccacgcgacacaatcgtgcacatgttattgctctaggtgcttttctttgggctgctgccactttcctcgtcgccatc |
37925867 |
T |
|
| Q |
101 |
tcatccacctttttacaggt |
120 |
Q |
| |
|
|| |||||||| |||||||| |
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|
| T |
37925866 |
tcctccaccttcttacaggt |
37925847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 26285229 - 26285317
Alignment:
| Q |
20 |
ctcgccacccgttacaatcgtgcacatgttattgctcttggtgcttttctttgggctgccgctacgttcctcgttgccatctcatccac |
108 |
Q |
| |
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|||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||| ||||| || || |||||| |||| ||||| |
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| T |
26285229 |
ctcgccacgcgtcataatcgtgctcatgttattgctcttggtgcttttctttgggctgctgctacttttcttgttgccttctcctccac |
26285317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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