View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16731_low_12 (Length: 454)
Name: NF16731_low_12
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16731_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 435
Target Start/End: Complemental strand, 35383770 - 35383317
Alignment:
| Q |
13 |
agagaggaaaagaaaagtaaaaaccatttggctagttcctctgaaggtgctctagaattgtcattgaatggagagctcaatcctggagataacccaccaa |
112 |
Q |
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| T |
35383770 |
agagaagaaaagaaaagtaaaaaccatttggctagttcctttgaaggtgctctagaattgtcattgaatggagaactcaatcctggagataacccaccaa |
35383671 |
T |
|
| Q |
113 |
aaattggtgatgaagtggcaggtgatgacatgtttgtgttgctcattggaactgatgtggttggtgtatttggtcctccagcaccactgaaaacattata |
212 |
Q |
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| T |
35383670 |
aaattggtgatgaagtggcaggtgatgacatgtttgtgttgctcattggaactgatgtggttggtgtatttggtcctccagcaccactgaaaacattata |
35383571 |
T |
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| Q |
213 |
ataaatcaaatagttagttaccattgatcct---------------------tcaatataaaattttgtaaggtaaaactgagaatg---aagaaaaagg |
288 |
Q |
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| T |
35383570 |
ataaatcaaatagttagttaccattgatcctttactccttgctatttaaggatcaatataaagttttgtaaggtaaaactgagaatgaaaaaaaaaaagg |
35383471 |
T |
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| Q |
289 |
tgctagtaaaacattgaaattttattatagtgtaataaccatataggtatgtgaccc-------catgattttgccagggcataatatatcaaaggcatc |
381 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35383470 |
tgctagtaaaacattgaaattttattatagtgtgataaccatataggtatgtgaccccatgacacatgattttgccagggcataatatatcaaaggcatc |
35383371 |
T |
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| Q |
382 |
aaacacattacaagcaatgattcaatcacaaccaacatcttctatatgatccct |
435 |
Q |
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| T |
35383370 |
aaacacattacaagcaatgattcaatcacaaccaacatcttctatatgatccct |
35383317 |
T |
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