View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16731_low_2 (Length: 743)
Name: NF16731_low_2
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16731_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 566; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 16 - 725
Target Start/End: Original strand, 30858542 - 30859257
Alignment:
| Q |
16 |
aatatcatgaccttttaccctgaaagacgattattcaagagaatgtatcgagacaagacatttccaaaaccatttgaataaatgatctatgttacataag |
115 |
Q |
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| T |
30858542 |
aatatcatgaccttttaccctgaaagatgattattcaagagaatgtattgagacaagacatttccaaaaccatttgaataaatgatctatgttacataag |
30858641 |
T |
|
| Q |
116 |
aaagaaaaacttgcaagaagcaacatgcataatataataacataacagaaaa-ctacaacatcataaataaccaatcaaattcgtaacagaaaactaaaa |
214 |
Q |
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| T |
30858642 |
aaagaaaaacttgcaagaagcaacatgcgtaatataataacataacagaaaaactacaacatcataaataaccaatcaaattcgtaatagaaaactaaaa |
30858741 |
T |
|
| Q |
215 |
ggaaaacattacaaatgaaaagccacgtactatggtatgcatgcatgcatgacacatatgtttcaagtctcactaaacgaagttccaaatcaacttcccc |
314 |
Q |
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| T |
30858742 |
ggaaaacattacaaatgaaaagccacgcactatggtatgcatgcatgcatgacacatatgtttcaagtctcactaaacgaagttccaaatcaacttcttc |
30858841 |
T |
|
| Q |
315 |
attaccagaagaagcactaagcactaggtcgagtatcgtatgtacttactctcaacttctgggttgaatactacttgtacttgtctcatttatttttaat |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30858842 |
attaccagaagaagcactaagcactaggtcgagtatcgtatgtacttactctcgacttctgggttgaatactacttgtacttgtctcatttatttttaat |
30858941 |
T |
|
| Q |
415 |
aatgct----cttgttgttcatnnnnnnnnnnnnnnnnnnnctagatagagtcatggaagtgctttcatcatagttgttggttttgttgctgaaactagc |
510 |
Q |
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| T |
30858942 |
aaagctcttacttgttgttcataaaataaaaaaataaaaaactagatagagtcatggaagtgctttcttcatagttgttggttttgttgctgaaactagc |
30859041 |
T |
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| Q |
511 |
ttcccctccataatatatatgttagaacattgtaagaaaaaggagctttctctgg-aaaaagagtgagagtttccttagcaggaccattgttagcaataa |
609 |
Q |
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| T |
30859042 |
ttcccctccataatatatatgttggaacattgtaagaaaaaggagctttctctggaaaaaagagtgagagtttccttagcaggaccattgttagcaataa |
30859141 |
T |
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| Q |
610 |
ctttccttttccttaaaccatgcatatatgcggtttggtaggtacttgaagaagctatatatagtagcatagctctgaacttcttgtggtgtcgtcttgc |
709 |
Q |
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| T |
30859142 |
ctttccttttccttaaaccgtgcatatatgcggtttggttggtacttgaagaagctatatatagtagcatagccctgaacttcttgtggtgtcgtcttgt |
30859241 |
T |
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| Q |
710 |
ataaatagtgctttat |
725 |
Q |
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|||||||||||||||| |
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| T |
30859242 |
ataaatagtgctttat |
30859257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 30878412 - 30878501
Alignment:
| Q |
74 |
catttccaaaaccatttgaataaatgatc--tatgttacat-aagaaagaaaaacttgcaagaagcaacatgcataatataataacataa |
160 |
Q |
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| T |
30878412 |
catttccaaaagcatttgaataaatgatccatatattacataaaggaggacaaacttgcaagccagaacatgcacaatataataacataa |
30878501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 723
Target Start/End: Complemental strand, 15059629 - 15059563
Alignment:
| Q |
657 |
gaagaagctatatatagtagcatagctctgaacttcttgtggtgtcgtcttgcataaatagtgcttt |
723 |
Q |
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| T |
15059629 |
gaagaagctatatatagtagcataattctaaacttgttatggtgttttgttgcctaaatagtgcttt |
15059563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 561 - 607
Target Start/End: Complemental strand, 15070798 - 15070752
Alignment:
| Q |
561 |
tctggaaaaagagtgagagtttccttagcaggaccattgttagcaat |
607 |
Q |
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| T |
15070798 |
tctggaaaaagagtgagagtttcctttgcaagatcattgttaacaat |
15070752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 602
Target Start/End: Complemental strand, 15064076 - 15064035
Alignment:
| Q |
561 |
tctggaaaaagagtgagagtttccttagcaggaccattgtta |
602 |
Q |
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| T |
15064076 |
tctggaaaaagagtgagagtttcctttgcatgatcattgtta |
15064035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 523
Target Start/End: Complemental strand, 15064154 - 15064089
Alignment:
| Q |
458 |
agagtcatggaagtgctttcatcatagttgttggttttgttgctgaaactagcttcccctccataa |
523 |
Q |
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| T |
15064154 |
agagtcatggaagtgcttgcttcatagttgttggtgttcttgctactgctagcttctcctccataa |
15064089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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