View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16731_low_28 (Length: 270)
Name: NF16731_low_28
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16731_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 52113514 - 52113277
Alignment:
| Q |
17 |
caacaacaacaacagtgtccggcacagacacaacatcgtcattagtttcacccgaaccacccaaaaaactttcaatgcgaagaatccctggagattacgg |
116 |
Q |
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| T |
52113514 |
caacaacaacaacagcgtccggcacagacacaacatcgtcattagtttcacccgaaccacccaaaaaacttccaatgcgaagaatccctggagattacgg |
52113415 |
T |
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| Q |
117 |
cctcccattcgtaggtcctatcaaagaccgtcttgaatatttctacaacgaaggcggccgcgacaaatatttcagaagtaaaatgcacaaatacaaatca |
216 |
Q |
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| T |
52113414 |
cctcccattcgtaggtcctatcaaagaccgtcttgaatatttctacaacgaaggcggccgcgacaaatatttcagaagcaaaatgcacaaatacaaatca |
52113315 |
T |
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| Q |
217 |
accatttttcgcgctaatatgccaccaggcccattcat |
254 |
Q |
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| T |
52113314 |
accatttttcgcgctaatatgccaccaggcccattcat |
52113277 |
T |
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