View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16731_low_30 (Length: 252)
Name: NF16731_low_30
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16731_low_30 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 35384232 - 35383991
Alignment:
| Q |
11 |
tgagatgaagtgcatgttaaaatgtgaagggtgtatctgcaattacacaacttaaagtaccaaataaaaatagtacttaccaccaatnnnnnnncaaata |
110 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35384232 |
tgagaagaagtgcatgttaaaatgtaaagggtgtatatgcaattacacaatttaacgtaccaaataaaaatagtacttaccaccaataaaaaaacaaata |
35384133 |
T |
|
| Q |
111 |
taacagagaataaattgaattaaataaaatcttgtataagctaatggtattgcaacgtttatgaaacatagtacattttgcaaagtgaacaaataaattg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35384132 |
taacagagaataaattgaattaaataaaatcttgtataagctaatggtattgcaacgtttatgaaacatagtacattttgcaaagggaacaaataaattg |
35384033 |
T |
|
| Q |
211 |
aactatttgaattaaatttgagccctatagatcaagaatcat |
252 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35384032 |
agctatttgaattaaatttgagccctatagatcaagaatcat |
35383991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 35388079 - 35387865
Alignment:
| Q |
10 |
gtgagatgaagtgcatgttaaaatgtgaagggtgtatctgcaattacacaacttaaagtaccaaataaaaatagtacttaccaccaatnnnnnnncaaat |
109 |
Q |
| |
|
|||||| ||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35388079 |
gtgagaagaaatgcatgttcaaatgtgaagggtgtatcagcaattacacaacttaaagtaccaaataaaaatagtacttaccaccaataaaaa---aaat |
35387983 |
T |
|
| Q |
110 |
ataacagagaataaattgaattaaataaaatcttgtataagctaatggtattgcaacgtttatgaaacatagtacattttgcaaagtgaacaaataaatt |
209 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
35387982 |
ataacagggaataaattgaattaaataaaatcttgtataagctaaaggtattgcaacatttctgaaacatagtacattttgcaaaggggacaaataaatt |
35387883 |
T |
|
| Q |
210 |
gaactatttgaattaaat |
227 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
35387882 |
gagctatttgaattaaat |
35387865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University