View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16731_low_32 (Length: 233)
Name: NF16731_low_32
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16731_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 42629657 - 42629459
Alignment:
| Q |
19 |
agtcatggatcaaactctttattgtgggtctgttgacctgtgttgagcatcctattggagttggtaaaaatggtgatatattcttgnnnnnnnnggataa |
118 |
Q |
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| T |
42629657 |
agtcatggatcaaactttttattgtgggtccgttgacctgtgttgagcatcctattggagttggtaaaaatggtgatatatacttgaaaaaaaaggataa |
42629558 |
T |
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| Q |
119 |
caaactagtttgttttaatttaatcacccaaaaaattgaagagcttggtgtcaaaggtgaaacaggcgagagctgccaaataatagtttatgaggaaag |
217 |
Q |
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| T |
42629557 |
caaactagtttgttttaatttaatcacccaaaaaattgaagagcttggtgtcaaaggtgaaacaggccagagctgccaaataatagtttatgaggaaag |
42629459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 9575469 - 9575310
Alignment:
| Q |
19 |
agtcatggatcaaactctttattgtgggtctgttgacctgtgttgagcatcctattggagttggtaaaaatggtgatatattcttgnnnnnnnnggataa |
118 |
Q |
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||||||||| ||||||||| || || | || |||| || |||| |||||||||| |||||||||||||| ||||| |||||||| |||||| |
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| T |
9575469 |
agtcatggaccaaactcttcatcgtagatccgttgttctatgttaagcatcctataggagttggtaaaaagggtgacatattctttagaaaaaaggataa |
9575370 |
T |
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| Q |
119 |
caaactagtttgttttaatttaatcacccaaaaaattgaagagcttggtgtcaaaggtga |
178 |
Q |
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| T |
9575369 |
tcaattagctaggtttaatttaatcacccagaaaattgtagagcttggtgttaaaggtga |
9575310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 41859690 - 41859542
Alignment:
| Q |
19 |
agtcatggatcaaactctttattgtgggtctgttgacctgtgttgagcatcctattggagttggtaaaaatggtgatatattcttgnnnnnnnnggataa |
118 |
Q |
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| T |
41859690 |
agtcatggatcaaactcttcgttgtaggtccgttgtccgatgttaagcgtcctattggagttggtaagaaaggagatatgtttttccggaaaaaggataa |
41859591 |
T |
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| Q |
119 |
caaactagtttgttttaatttaatcacccaaaaaattgaagagcttggt |
167 |
Q |
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| T |
41859590 |
tgaactagttttgtttaatttaagcacccagagaattgaagaccttggt |
41859542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 45866901 - 45867058
Alignment:
| Q |
19 |
agtcatggatcaaactctttattgtgggtctgttgacctgtgttgagcatcctattggagttggtaaaaatggtgatatattcttgnnnnnnnnggataa |
118 |
Q |
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|||||||||||||||| |||||||||||| ||| | ||||| || ||||||||| || ||||||| | |||||||||||||| ||| | |
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| T |
45866901 |
agtcatggatcaaactttttattgtgggttctttgtcttgtgtcgaccatcctattagaattggtaagacgggtgatatattctttagaaaagaagatga |
45867000 |
T |
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| Q |
119 |
caaactagtttgttttaatttaatcacccaaaaaattgaagagcttggtgtcaaaggt |
176 |
Q |
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||||||||| |||||||||| ||| || |||||||||||||||||||| |||||| |
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| T |
45867001 |
tgaactagtttcatttaatttaagcacacagaaaattgaagagcttggtgttaaaggt |
45867058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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