View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16731_low_33 (Length: 216)
Name: NF16731_low_33
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16731_low_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 28265107 - 28265305
Alignment:
| Q |
8 |
tcttttcctctttagtaatgcatatgctactaatgctaccgctggtataattacaacccctaaagagacggttagtatcacaactaatcttgtctcttta |
107 |
Q |
| |
|
||||||||||||||||| | |||||||||| |||||| || || |||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
28265107 |
tcttttcctctttagtattacatatgctaccaatgctcccactcctataattacagcccctaaagagactgttagtatcacaactaatcttgtatcttta |
28265206 |
T |
|
| Q |
108 |
ctattactatcatcacttttctccaaagtggaattaaattcccatgacaaaagagtatttaattctcttatgttacctattgaagcagaaaatcctatg |
206 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28265207 |
ctattactatcatcacttttctccaaattggaattaaattcccatgacaaaagattatttaattctcttatgttacctattgaagcagaaaatcctatg |
28265305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 28305118 - 28305291
Alignment:
| Q |
1 |
ttctctttcttttcctctttagtaatgcatatgctactaatgctaccgctggtataattacaacccctaaagagacggttagtatcacaactaatcttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| |||||| || || |||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28305118 |
ttctctttcttttcctctttagtattacatatgctaccaatgctcccactcctataattacagcccctaaagagactgttagtatcacaactaatcttgt |
28305217 |
T |
|
| Q |
101 |
ctctttactattactatcatcacttttctccaaagtggaattaaattcccatgacaaaagagtatttaattctc |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
28305218 |
atctttactattactatcatcacttttctccaaattggaattaaattcccatgacaaaagattatttacttctc |
28305291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 28294916 - 28295088
Alignment:
| Q |
1 |
ttctctttcttttcctctttagtaatgcatatgctactaatgctaccgctggtataattacaacccctaaagagacggttagtatcacaactaatcttgt |
100 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||||||||||| || || ||||| || |||||| |||| || |||||||| | |||||||||||| |
|
|
| T |
28294916 |
ttctctttcttttcctccaaaataatgcgtatgctactaatgctcccactcctataactataaccccacaagaaaccgttagtattataactaatcttgt |
28295015 |
T |
|
| Q |
101 |
ctctttactattactatcatcacttttctccaaagtggaattaaattcccatgacaaaagagtatttaattct |
173 |
Q |
| |
|
|||||| | ||||||||| ||||| | |||||||||| || |||||||||||||||||| |||||||||| |
|
|
| T |
28295016 |
ctcttttgttttactatcaccacttgtggccaaagtggagttgaattcccatgacaaaagataatttaattct |
28295088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University