View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16731_low_36 (Length: 205)
Name: NF16731_low_36
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16731_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 37628585 - 37628489
Alignment:
| Q |
19 |
taggttgcttgctttatgatgcatattagagttctttataaggtggtatttatagaccaacaaaatcttattttaaatctaattgaatatattttaa |
115 |
Q |
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| T |
37628585 |
taggttgcttgctttatgatgcatattagagttctttataaggtggtatttatagaccaacaaaatcttattttaaatctaattgaatatattttaa |
37628489 |
T |
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Target: chr3; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 37627724 - 37627639
Alignment:
| Q |
107 |
atattttaataatctgatttgttcaacttaattttcttagatttattagtctaaatcagagcttgtgtttattttgggttcctttg |
192 |
Q |
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| T |
37627724 |
atattttaataatctgatttgttcaacttaattttcttagatttattagtctaaatcagagcttgtgtttattttgggttcatttg |
37627639 |
T |
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