View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16731_low_4 (Length: 613)

Name: NF16731_low_4
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16731_low_4
NF16731_low_4
[»] chr5 (2 HSPs)
chr5 (5-612)||(11158647-11159253)
chr5 (9-106)||(22437109-22437206)
[»] chr4 (1 HSPs)
chr4 (6-535)||(10392379-10392909)
[»] chr2 (4 HSPs)
chr2 (12-534)||(31071520-31072043)
chr2 (9-451)||(43689051-43689495)
chr2 (20-439)||(19517759-19518182)
chr2 (33-291)||(37048892-37049150)
[»] chr1 (3 HSPs)
chr1 (364-532)||(43944199-43944366)
chr1 (333-491)||(33142994-33143152)
chr1 (359-415)||(22191622-22191678)
[»] chr3 (1 HSPs)
chr3 (17-128)||(13797603-13797714)
[»] chr7 (2 HSPs)
chr7 (379-490)||(4344082-4344193)
chr7 (148-192)||(25708507-25708551)
[»] chr8 (1 HSPs)
chr8 (381-432)||(26074190-26074241)
[»] scaffold0062 (3 HSPs)
scaffold0062 (333-411)||(17290-17368)
scaffold0062 (333-411)||(27458-27536)
scaffold0062 (333-411)||(37624-37702)


Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 5 - 612
Target Start/End: Original strand, 11158647 - 11159253
Alignment:
Q  5 acctcgaacaagatgccacaactctctgaaaatggtacaagaaacaaacaagtgttgagccgtttccatttccccgcactcagtcacacacatctgcgcc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11158647 acctcgaacaagatgccacaactctctgaaaatggtacaagaaacaaacaagtgttgagccgtttccatttccccgcactcagtcacacacatctgcgcc 11158746  T
Q  105 tcaggagagatgatcccgcgagccaacatattagattttatacgcaacctgttgcggagaagacgccacgcaaggagagacacttttattagaacatgta 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||     
T  11158747 tcaggagagatgatcccgcgagccaacatattagattttatacgcaacttgttgcggagaagatgccacgcaaggagagacacttttattagaacatgtc 11158846  T
Q  205 tgtgccaaattaacttagaaaccacatccaacacctaacattcatttgcagtaagcacatgatacacattgcggacagaataaccaccattatcaaggtg 304  Q
    |||||||||| |||||||||||| |||||||||||| || ||||| ||||||||||| |||||||||| ||| |||| ||||||||||||||||||||||    
T  11158847 tgtgccaaatgaacttagaaaccgcatccaacacctgactttcatctgcagtaagcatatgatacacactgcagacaaaataaccaccattatcaaggtg 11158946  T
Q  305 ccaattccatcggtcagaaatcgaaaagtgcaaaacaacatgagacaacagcaacctacactcccgaaccaagtcttcctcccaatcccacaacctccta 404  Q
    ||||||||||| |||||||||| ||| |||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11158947 ccaattccatcagtcagaaatcaaaacgtgcaaaacaacatcagacaacaacaacctacactcccgaaccaagtcctcctcccaatcccacaacctccta 11159046  T
Q  405 cgccactgccaagtctctcccccttcctccacccccaacgaaaacatttcctccaccaaacaatttttattaacacttaaatcataccgatttctaaacc 504  Q
    | || |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11159047 caccgctgccaagtctctcccccttcctccacccccaacgcgaacatttcctccaccaaacaatttttattaacacttaaatcataccgatttttaaacc 11159146  T
Q  505 gcaccgccaacggaactccacctacccac-gatcagttcnnnnnnnntgtatccataccgtcccccaccttcttaaaataaatgaaagtagattattctc 603  Q
    |||||||||  ||||||||||||| | || |||||| ||        ||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  11159147 gcaccgccagtggaactccacctaactacggatcag-tccaaaaaaatgtatccatactgt-ccccaccttcttaaaataaatgaaagtagattattctc 11159244  T
Q  604 aatttaaaa 612  Q
    |||||||||    
T  11159245 aatttaaaa 11159253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 22437109 - 22437206
Alignment:
Q  9 cgaacaagatgccacaactctctgaaaatggtacaagaaacaaacaagtgttgagccgtttccatttccccgcactcagtcacacacatctgcgcctc 106  Q
    |||||||| ||||| ||||||||||| ||||| ||||||||||| || |||||||| ||||||| ||| |||||| | || |||||||| || |||||    
T  22437109 cgaacaaggtgccataactctctgaatatggtgcaagaaacaaataaatgttgagctgtttccacttctccgcacccggtgacacacatatgagcctc 22437206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 6 - 535
Target Start/End: Complemental strand, 10392909 - 10392379
Alignment:
Q  6 cctcgaacaagatgccacaactctctgaaaatggtacaagaaacaaacaagtgttgagccgtttccatttccccgcactcagtcacacacatctgcgcct 105  Q
    ||||| |||||| |||||||||||| |||||||| |||  |||| ||||| ||||| |||||||||| ||| || |||  ||||||||||||||| | ||    
T  10392909 cctcggacaagaggccacaactctcggaaaatgggacacaaaacgaacaaatgttgcgccgtttccacttctccacacctagtcacacacatctgagtct 10392810  T
Q  106 caggagagatgatcccgcgagccaacatattagattttatacgcaacctgttgcggagaagacgccacgcaaggagagacacttttattagaacatgtat 205  Q
    || ||||||| |||||||| |||| || |||||||||  || ||||||||||||| ||||||||||| ||||||| |||||||||| || | |||||| |    
T  10392809 catgagagataatcccgcgggccatcaaattagatttggtaggcaacctgttgcgaagaagacgccaagcaaggatagacactttttttgggacatgtct 10392710  T
Q  206 gtgccaaattaacttagaaaccacatccaacacctaacattcatttgcagtaagcacatgatacacattgcggacagaataaccacc---attatcaagg 302  Q
     || ||||| ||||| ||||||  |||||| |||| ||  | || ||||||||||| |||||| ||| | |||||  |||| |||||   |||||||||     
T  10392709 atgtcaaatgaacttcgaaaccgtatccaaaacctgactattatctgcagtaagcatatgataaacactacggacgaaatagccaccattattatcaaga 10392610  T
Q  303 tgccaattccatcggtcagaaatcgaaaagtgcaaaacaacatgagacaacagcaacctacactcccgaaccaagtcttcctcccaatcccacaacctcc 402  Q
    |||| |||||||||||||  |||| |||  || |||| || || ||||||||  |||| |||| ||||||||||||| ||||| ||||||||||||||||    
T  10392609 tgccgattccatcggtcaacaatcaaaacttgtaaaataatatcagacaacaataaccgacac-cccgaaccaagtcctcctctcaatcccacaacctcc 10392511  T
Q  403 tacgccactgccaagtctctcccccttcctccacccccaacgaaaacatttcctccaccaaacaatttttattaacacttaaatcataccgatttctaaa 502  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |||||||||| |||| |||||| |||||||||||||||||||||||     ||||||    
T  10392510 tacgccactgccaagcctctccccc-tcctccacccccaacgcaaacatttcccccactaaacaaattttattaacacttaaatcatacaagcgtctaaa 10392412  T
Q  503 ccgcaccgccaacggaactccacctacccacga 535  Q
    ||||||||||||||  |||||||||||||||||    
T  10392411 ccgcaccgccaacgagactccacctacccacga 10392379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 12 - 534
Target Start/End: Complemental strand, 31072043 - 31071520
Alignment:
Q  12 acaagatgccacaactctctgaaaatggtacaagaaacaaacaagtgttgagccgtttccatttccccgcactcagtcacacacatctgcgcctcaggag 111  Q
    |||||| |||||||||||| |||||||| ||| |||   ||||||||||| |||||||||| |||  ||||| |||||| |||||| || |||||| |||    
T  31072043 acaagaggccacaactctcggaaaatggaacacgaacggaacaagtgttgcgccgtttccacttcttcgcacccagtcatacacatatgagcctcatgag 31071944  T
Q  112 agatgatcccgcgagccaacatattagattttatacgcaacctgttgcggagaagacgccacgcaaggagagacacttttattagaacatgtatgtgcca 211  Q
    |||| |||| |||||||| || || ||||||  || ||||||||||||| ||||||||||| ||||||| |||||||||| |  | |||||| |||||||    
T  31071943 agataatcctgcgagccatcagatcagatttggtaggcaacctgttgcgaagaagacgccaagcaaggatagacacttttgtcgggacatgtctgtgcca 31071844  T
Q  212 aattaacttagaaaccacatccaacacctaacat-tcatttgcagtaagcacatgatacacattgcggacagaataaccaccattatc---aaggtgcca 307  Q
     || | ||| ||||||   || || |||| | || ||||||||||||||||  || || ||| | ||||||||||| |||||||||||   |||||||||    
T  31071843 catgagctttgaaaccgtgtctaa-accttagatgtcatttgcagtaagcatgtggtaaacactacggacagaatagccaccattatcttcaaggtgcca 31071745  T
Q  308 attccatcggtcagaaatcgaaaagtgcaaaacaacatgagacaacagcaacctacactcccgaaccaagtcttcctcccaatcccacaacctcctacgc 407  Q
    |||||||||||| | | ||||||  || |||| || || ||||||| | |||| | ||| |||||||||||| |||||||||||||||||||||||||||    
T  31071744 attccatcggtc-gcagtcgaaacttgtaaaataatatcagacaacggtaaccgatacttccgaaccaagtcctcctcccaatcccacaacctcctacgc 31071646  T
Q  408 cactgccaagtctctcccccttcctccacccccaacgaaaacatttcctccaccaaacaatttttattaacacttaaatcataccgatttctaaaccgca 507  Q
    |||| ||||| ||||||||| |||||||||||||||  |||||||||| |||  ||||||||||||||||||||||||||||||     ||||||| |||    
T  31071645 cacttccaagcctctccccc-tcctccacccccaacacaaacatttcccccattaaacaatttttattaacacttaaatcatacaagcgtctaaacggca 31071547  T
Q  508 ccgccaacggaactccacctacccacg 534  Q
    |||||||| | ||||||||||||||||    
T  31071546 ccgccaacaggactccacctacccacg 31071520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 9 - 451
Target Start/End: Complemental strand, 43689495 - 43689051
Alignment:
Q  9 cgaacaagatgccacaactctctgaaaatggtacaagaaacaaacaagtgttgagccgtttccatttccccgcactcagtcacacacatctgcgcctcag 108  Q
    |||| |||||| || ||||||  |||||||||||||||||| ||||| ||||| |||||||||| ||| |||||| ||| ||||||||| || ||||||     
T  43689495 cgaataagatgtcaaaactcttagaaaatggtacaagaaacgaacaaatgttgtgccgtttccacttcaccgcacccagccacacacatttgtgcctcat 43689396  T
Q  109 gagagatgatcccgcgagccaacatattagattttatacgcaacctgttgcggagaagacgccacgcaaggagagacacttttattagaacatgtatgtg 208  Q
    |||||||||||||||||||||  | |||||||||  || |||| ||||||||||| || || || |||||||||||||| ||||  ||||||||||||||    
T  43689395 gagagatgatcccgcgagccagaagattagatttggtaggcaatctgttgcggagtagtcgtcatgcaaggagagacacctttaccagaacatgtatgtg 43689296  T
Q  209 ccaaattaacttagaaaccacatccaacacctaacattcatttgcagtaagcacatgatacacattgcggacagaataaccacc---attatcaaggtgc 305  Q
    ||||||||||||||||| |  |||||  || |  |  |||| |||||| ||||  ||||| ||| | | |||| |||| |||||   |||||||||| ||    
T  43689295 ccaaattaacttagaaatcgtatccataacatgtctgtcatctgcagtgagcatgtgataaacactacagacataatagccaccattattatcaaggcgc 43689196  T
Q  306 caattccatcggtcagaaatcgaaaagtgcaaaacaacatgagacaacagcaacctacactcccgaaccaagtcttcctcccaatcccacaacctcctac 405  Q
    |||||||||||| |||  |||||||  ||||||||||  |  ||||||| ||||||||||||||| | ||  || |||||||| |||||||||||||  |    
T  43689195 caattccatcggccagtgatcgaaacatgcaaaacaatgtcggacaacaacaacctacactcccgtaacatctcctcctcccactcccacaacctccgcc 43689096  T
Q  406 gccactgccaagtctctcccccttcctccacccccaacgaaaacat 451  Q
    |||||  ||||||||||||||| ||||||| |||||||||||||||    
T  43689095 gccaccaccaagtctctcccccctcctcca-ccccaacgaaaacat 43689051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 20 - 439
Target Start/End: Complemental strand, 19518182 - 19517759
Alignment:
Q  20 ccacaactctctgaaaatggtacaagaaacaaacaagtgttgagccgtttccatttccccgcactc-agtcacacacatctgcgcctcaggagagatgat 118  Q
    ||||||||| ||||||||||  |||||||||||||| ||||| || ||||||| ||| |||||| | |||||||||| | || |||||| |||| |||||    
T  19518182 ccacaactcactgaaaatggagcaagaaacaaacaaatgttgcgctgtttccacttcaccgcaccccagtcacacacctgtgagcctcatgagaaatgat 19518083  T
Q  119 cccgcgagccaacatattagattttatacgcaacctgttgcggagaagacgccacgcaaggagagacacttttattagaacatgtatgtgccaaattaac 218  Q
    |  |||||||| ||||||||||||  || | |||||||||| || |||||| || || | || ||||||||||    | ||  |  |||||||||| |      
T  19518082 catgcgagccagcatattagatttggtaggaaacctgttgcagaaaagacgtcaagccatgatagacacttttgccggcacccgcctgtgccaaatgaga 19517983  T
Q  219 ttagaaaccacatccaacacctaacattcatttgcagtaagcacatgatacacattgcggacagaataaccacc---attatcaaggtgccaattccatc 315  Q
    || |||  | | || || |||| ||  | || | ||||||||| ||| || ||| | ||||||||||| ||| |   |||||||||||||||||||||||    
T  19517982 tttgaatgcgcctctaaaaccttactgttatctacagtaagcatatggtaaacactacggacagaatagccatcgttattatcaaggtgccaattccatc 19517883  T
Q  316 ggtcagaaatcgaaaagtgcaaaacaacatgagacaacagcaacctacactcccgaaccaagtcttcctcccaatcccacaacctcctacgccactgcca 415  Q
    |||||| ||| ||||  |  ||||||||||  | |||||| |||| |||||||| |||||| || ||||||||||| ||||||||||||| || ||||||    
T  19517882 ggtcagcaattgaaacatttaaaacaacatccgtcaacagtaaccgacactccctaaccaaatcatcctcccaatctcacaacctcctacacctctgcca 19517783  T
Q  416 agtctctcccccttcctccacccc 439  Q
    || |||  | || |||||||||||    
T  19517782 agcctccacaccctcctccacccc 19517759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 33 - 291
Target Start/End: Complemental strand, 37049150 - 37048892
Alignment:
Q  33 aaaatggtacaagaaacaaacaagtgttgagccgtttccatttccccgcactcagtcacacacatctgcgcctcaggagagatgatcccgcgagccaaca 132  Q
    ||||||||||||||||| ||||| ||||| ||||||||||  || | |||| |||||||||||||||| |||||  ||||||||||  | |||||||  |    
T  37049150 aaaatggtacaagaaacgaacaaatgttgcgccgtttccacctcactgcacccagtcacacacatctgagcctcctgagagatgatatcacgagccacaa 37049051  T
Q  133 tattagattttatacgcaacctgttgcggagaagacgccacgcaaggagagacacttttattagaacatgtatgtgccaaattaacttagaaaccacatc 232  Q
     ||| |||||  |  | || | |||||||| ||| | ||||||| |||||||||| ||||   | ||||||||||||||||| || || |||||| | ||    
T  37049050 gatttgatttggtgggtaatcagttgcggaaaagtcaccacgcagggagagacacctttaccgggacatgtatgtgccaaatcaattttgaaaccgcgtc 37048951  T
Q  233 caacacctaacattcatttgcagtaagcacatgatacacattgcggacagaataaccac 291  Q
    |||||||| ||  |||| || ||| |||| |||||| ||| | | ||| ||||||||||    
T  37048950 caacacctgactgtcatctgtagtgagcatatgataaacactacagacggaataaccac 37048892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 364 - 532
Target Start/End: Complemental strand, 43944366 - 43944199
Alignment:
Q  364 actcccgaaccaagtcttcctcccaatcccacaacctcctacgccactgccaagtctctcccccttcctccacccccaacgaaaacatttcctccaccaa 463  Q
    |||||||||| |  || ||||||||||||||||||| ||||||||||||||||| ||| || || ||||||||||| || | |||||||||| |||| |     
T  43944366 actcccgaactagctcctcctcccaatcccacaaccgcctacgccactgccaagcctccccaccctcctccaccccgaatgcaaacatttcccccactag 43944267  T
Q  464 acaatttttattaacacttaaatcataccgatttctaaaccgcaccgccaacggaactccacctaccca 532  Q
    ||||||||||||||||||||| |||||  |   ||||||||| | |||||| || ||||||||||||||    
T  43944266 acaatttttattaacacttaa-tcatataggcgtctaaaccgaatcgccaatgggactccacctaccca 43944199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 491
Target Start/End: Complemental strand, 33143152 - 33142994
Alignment:
Q  333 tgcaaaacaacatgagacaacagcaacctacactcccgaaccaagtcttcctcccaatcccacaacctcctacgccactgccaagtctctcccccttcct 432  Q
    ||||||||||||| |||||||| ||  |||||||| | |||||   | |||||||||| |||||| | ||| | ||||| ||| |  |||||||||||||    
T  33143152 tgcaaaacaacattagacaacaacagactacactcgccaaccatcacctcctcccaataccacaaacgccttctccacttccacgcatctcccccttcct 33143053  T
Q  433 ccacccccaacgaaaacatttcctccaccaaacaatttttattaacacttaaatcatac 491  Q
    ||   ||||| | |  ||| |||||||||  ||||| |||||| |||||||| ||||||    
T  33143052 cccaacccaatgtagccatctcctccaccgtacaatgtttattgacacttaagtcatac 33142994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 22191678 - 22191622
Alignment:
Q  359 cctacactcccgaaccaagtcttcctcccaatcccacaacctcctacgccactgcca 415  Q
    |||||||||||  ||||| || ||||||||  ||||||||| |||||||||||||||    
T  22191678 cctacactcccctaccaactcctcctcccatgcccacaaccgcctacgccactgcca 22191622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 13797714 - 13797603
Alignment:
Q  17 atgccacaactctctgaaaatggtacaagaaacaaacaagtgttgagccgtttccatttccccgcactcagtcacacacatctgcgcctcaggagagatg 116  Q
    |||||| ||||||||||| ||||||||||| |  || || ||||| |||||||||| ||  |||||| ||||||| |||||||| |||||  |||||| |    
T  13797714 atgccataactctctgaatatggtacaagagaagaataaatgttgcgccgtttccacttttccgcacccagtcacgcacatctgagcctcctgagagagg 13797615  T
Q  117 atcccgcgagcc 128  Q
    ||||| ||||||    
T  13797614 atcccacgagcc 13797603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 379 - 490
Target Start/End: Original strand, 4344082 - 4344193
Alignment:
Q  379 cttcctcccaatcccacaacctcctacgccactgccaagtctctcccccttcctccacccccaacgaaaacatttcctccaccaaacaatttttattaac 478  Q
    ||||||||||||||||||||| ||| ||||||||||||| ||| || || ||||||  |||||||  |  ||| |||||||||  |||||  ||||  ||    
T  4344082 cttcctcccaatcccacaaccgcctgcgccactgccaagcctcacctccctcctcccaccccaacacatgcatatcctccaccgtacaatgcttatcgac 4344181  T
Q  479 acttaaatcata 490  Q
    ||||||||||||    
T  4344182 acttaaatcata 4344193  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 25708507 - 25708551
Alignment:
Q  148 gcaacctgttgcggagaagacgccacgcaaggagagacactttta 192  Q
    ||||||||||||||||||||| ||| ||||||| |||||| ||||    
T  25708507 gcaacctgttgcggagaagacaccaagcaaggatagacaccttta 25708551  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 432
Target Start/End: Original strand, 26074190 - 26074241
Alignment:
Q  381 tcctcccaatcccacaacctcctacgccactgccaagtctctcccccttcct 432  Q
    |||||||| |||||||||||||| ||||||||||||| ||| || |||||||    
T  26074190 tcctcccagtcccacaacctcctccgccactgccaagcctcaccaccttcct 26074241  T

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Target: scaffold0062 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 411
Target Start/End: Complemental strand, 17368 - 17290
Alignment:
Q  333 tgcaaaacaacatgagacaacagcaacctacactcccgaaccaagtcttcctcccaatcccacaacctcctacgccact 411  Q
    ||||||||||||| || ||||| ||||||||||||||  || ||  | |||| ||||||| |||||||| |||||||||    
T  17368 tgcaaaacaacattagccaacaacaacctacactcccccactaacacctccttccaatcctacaacctcatacgccact 17290  T

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Target: scaffold0062; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 411
Target Start/End: Complemental strand, 27536 - 27458
Alignment:
Q  333 tgcaaaacaacatgagacaacagcaacctacactcccgaaccaagtcttcctcccaatcccacaacctcctacgccact 411  Q
    ||||||||||||| || ||||| ||||||||||||||  || ||  | |||| ||||||| |||||||| |||||||||    
T  27536 tgcaaaacaacattagccaacaacaacctacactcccccactaacacctccttccaatcctacaacctcatacgccact 27458  T

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Target: scaffold0062; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 411
Target Start/End: Complemental strand, 37702 - 37624
Alignment:
Q  333 tgcaaaacaacatgagacaacagcaacctacactcccgaaccaagtcttcctcccaatcccacaacctcctacgccact 411  Q
    ||||||||||||| || ||||| ||||||||||||||  || ||  | |||| ||||||| |||||||| |||||||||    
T  37702 tgcaaaacaacattagccaacaacaacctacactcccccactaacacctccttccaatcctacaacctcatacgccact 37624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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