View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16731_low_7 (Length: 493)
Name: NF16731_low_7
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16731_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 52033767 - 52034209
Alignment:
| Q |
1 |
gtatcttcttttctatttcctatggtattggctttgctgccattgtctctacactcactcacgttgccatatttaatggaaagtaagttatggttaagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52033767 |
gtatcttcttttctatttcctatggtattggctttgctgccattgtctctacactcactcacgttgccatatttaatggaaagtaagttatggttaagtt |
52033866 |
T |
|
| Q |
101 |
acattgcatatatagttctcaaattgtggaattaaattactattgctgattaaattaactaactgcagagatatatatcatcaacttcaatcttcccgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52033867 |
acattgcatatatagttctcaaattgtggaattaaattactattgctgattaaattaactaactgcagagatatatatcatcaacttcaatcttcccgaa |
52033966 |
T |
|
| Q |
201 |
ctggaaaggaagacattcacacaagattgatgaagaagtataaagacatacctaattggtggtttcatgttacgcttgtggtttcatttttacttgcact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52033967 |
ctggaaaggaagacattcacacaagattgatgaagaagtataaagacatacctaattggtggtttcatgttacgcttgtggtttcatttttacttgcact |
52034066 |
T |
|
| Q |
301 |
tgcattgtgtattttcatgaaagaagagatacaaatgccatggtgggctctcatctttgcttctggacttgcactcatttttactcttcccgttgccatc |
400 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52034067 |
tgcattgtgtattttcaagaaagaagagatacaaatgccatggtgggctctcatctttgcttctggacttgcactcatttttactcttcccgttgccatc |
52034166 |
T |
|
| Q |
401 |
ataactgccaccactaatcaggtacgtacgcttcattccctca |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52034167 |
ataactgccaccactaatcaggtacgtacgcttcattccctca |
52034209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University