View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16731_low_8 (Length: 493)
Name: NF16731_low_8
Description: NF16731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16731_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Original strand, 35951145 - 35951605
Alignment:
| Q |
17 |
aatatactaataaatttatttgaataagaatcgctatacttatggtcttaatataattaattaagcctactcttttgtttcacgtttatagcaagcaaaa |
116 |
Q |
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| T |
35951145 |
aatatactaataaatttatttgaataagaatcactatacttatggtcttaatataattaattaagcctacttttttgtttcacgtttatagcaagcaaaa |
35951244 |
T |
|
| Q |
117 |
ttgattctggagttgtaaatttgatgttgacatgtttaattgttcttgaatacaaatgattttatcttcagaattgattcttaaatctaatttgaagcta |
216 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35951245 |
ttgattctggagctgtaaaattgatgttgacatgtttaattgttcttgaatacaaatgattttatcttcagaattgattcctaaatctaatttgaagcta |
35951344 |
T |
|
| Q |
217 |
gttt-gtagattttgagtctaaaatgtgatttttacactggattttttgtcaagctcaataaacctatccaaacataaattaatttattcaactaagttt |
315 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35951345 |
gttttgtagattttgagtctaaaatgtgacttttacactggattttttgtcaagctcaataaacgtatccaaacataaattaatttattcaactaagttt |
35951444 |
T |
|
| Q |
316 |
taaagtaaaatgaattgtttaaaatcaatttttatcaccacaaaacccaagttcatcaatactactcatcatcatggcataacatgaacagtaattatac |
415 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35951445 |
taaagtaaaacgaattatttaaaatcaatttttatcaccacaaaacccaagttcattaatactactcatcatcatggcataacatgaacaataattatac |
35951544 |
T |
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| Q |
416 |
agacatagctgaaatttatacacaacgacaataattgagaaaagtacttatggaatggggt |
476 |
Q |
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| T |
35951545 |
agacatagctgaaatttatacacaacgacaataattgagaaaagtacttatggaatggggt |
35951605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 2778550 - 2778510
Alignment:
| Q |
113 |
aaaattgattctggagttgtaaatttgatgttgacatgttt |
153 |
Q |
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| T |
2778550 |
aaaattgattctgaagatgtaaaattgatgttgacatgttt |
2778510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 50550516 - 50550592
Alignment:
| Q |
115 |
aattgattctggagttgtaaatttgatgttgacatgtttaattgttcttgaatacaaatgattttatcttcagaatt |
191 |
Q |
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|||||||| |||| |||| | ||||| |||||||||||||||||| |||| || || ||||| | ||||||||||| |
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| T |
50550516 |
aattgattttggatgtgtagagttgattttgacatgtttaattgttgttgattagaattgattctgtcttcagaatt |
50550592 |
T |
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