View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_high_12 (Length: 491)
Name: NF16732_high_12
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 12 - 465
Target Start/End: Original strand, 48895693 - 48896129
Alignment:
| Q |
12 |
agcagagataaaagttgcaagtcatgagcatgcagaaataggagcatggagtaaaattatactcaagtgtttgcccctgttagcagaatgggtattatga |
111 |
Q |
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| T |
48895693 |
agcagagataaaagttgcaagtcatgagcatgcagaaataggagcatggagtaaa-ttatactcaagtgtttgcccctgttagcagaatgggtattatga |
48895791 |
T |
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| Q |
112 |
gaatgatcgtagctattaggagttgtaggaaagaaagagagaatagaaatgatggaatgttttcaaaatgcatgagttggtgaggaatttgagttctcaa |
211 |
Q |
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| T |
48895792 |
gaatgatcgtagctattaggagttgtaggaaagaaagagagaatagaaatgatggaatgttttcaaaatgcatgagttggtgaggaatttgagttctcaa |
48895891 |
T |
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| Q |
212 |
cgagatatttctcaagataatactcacaagatagttctcttttgaacgggattcagggcataatttagtgcaactaaaattaatttgttcaagagagtct |
311 |
Q |
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| T |
48895892 |
cgagatatttctcaagataatactcacaagatagttctcttttgaacgggattcagggcataatttagtgcaactaaaattaatttgttcaa-------- |
48895983 |
T |
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| Q |
312 |
aatcttttgagattatgtacacttccattaaaaacattatcagtcaaaacaagactcttgagctttttgaacgaggaaattgatgatggaattttatcat |
411 |
Q |
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| T |
48895984 |
--------gagattatgtacacttccattaaaaacattatcagtcaaaacaagactcttgagctttttgaaagaggaaattgatgatggaattttatcat |
48896075 |
T |
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| Q |
412 |
acatgaaatttgattatgtaatgttctaaacttcaagagaattaatcttacttc |
465 |
Q |
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| T |
48896076 |
acatgaaatttgattatgtaatgttctaaacttcaaaagaattgatcttacttc |
48896129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 299 - 425
Target Start/End: Original strand, 16216327 - 16216453
Alignment:
| Q |
299 |
ttcaagagagtctaatcttttgagattatgtacacttccattaaaaacattatcagtcaaaacaagactcttgagctttttgaacgaggaaattgatgat |
398 |
Q |
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| T |
16216327 |
ttcaagagaggttaatcttttgagattaggaacacttccattgaaaaaattatcagccaaaacaagactcttgagatttttcattgaagaaactgataat |
16216426 |
T |
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| Q |
399 |
ggaattttatcatacatgaaatttgat |
425 |
Q |
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| T |
16216427 |
ggaatttttccatacaagaaatttgat |
16216453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 290 - 425
Target Start/End: Original strand, 16963573 - 16963708
Alignment:
| Q |
290 |
attaatttgttcaagagagtctaatcttttgagattatgtacacttccattaaaaacattatcagtcaaaacaagactcttgagctttttgaacgaggaa |
389 |
Q |
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| T |
16963573 |
attaatctcttcaagagaggttaatcttttgagattaggaacacttccattgaaaaaattatcagccaaaacaagactcttaagacttttcattgaagaa |
16963672 |
T |
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| Q |
390 |
attgatgatggaattttatcatacatgaaatttgat |
425 |
Q |
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| T |
16963673 |
actgatgatggaatttttccatacaagaaatttgat |
16963708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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