View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_high_14 (Length: 424)
Name: NF16732_high_14
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 8764150 - 8764567
Alignment:
| Q |
1 |
ccaactcaaatattatgaataaaaattttcaaatttcaaaagttgttgccctacacaaatgaatcaagacgtgcatggaaatttcaagcaaatccatagg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8764150 |
ccaactcaaatattatgaataaaatttttcaaatttcaaaagttgttgccctacacaaatgaatcaagacgtgcatggaaatttcaagcaaatccatagg |
8764249 |
T |
|
| Q |
101 |
ctaagttggaaaagtatgacatggtgagcagtctcaaatagtttacatgttaaccaccacnnnnnnnc-ctctatataaaggcactaaaatcaaggacat |
199 |
Q |
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| T |
8764250 |
ctaagttggaaaagtatgacatggtgagcagtctcaaatagtttacattttaaccaccactttttttttctctatataaaggcactaaaatcaaggacat |
8764349 |
T |
|
| Q |
200 |
aaacctcactcataatcaaaccaaaacctcataaacccttctctaaatttctcatcaaaccaaaccctaaaataatttttca----atggcttcatttcc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
8764350 |
aaacctcactcataatcaaaccaaaacctcataaacccttctctaaatttctcatcaaaccaaaccctaaaatcatttttcattcaatggcttcatttcc |
8764449 |
T |
|
| Q |
296 |
tttggtaacaactcttttaatatttccatttcttttctccactattgtttatggttactcattaagttccataaaatcatggtgtagccaaaccccttat |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8764450 |
tttggtaacaactcttttaatatttccatttcttttctccactattgtttatggttactcattaagttccataaaatcatggtgtagccaaaccccttat |
8764549 |
T |
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| Q |
396 |
cctcaaccatgtgagtat |
413 |
Q |
| |
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|||||||||||||||||| |
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| T |
8764550 |
cctcaaccatgtgagtat |
8764567 |
T |
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