View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16732_high_19 (Length: 392)
Name: NF16732_high_19
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_high_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 30279042 - 30278679
Alignment:
| Q |
19 |
gattgggcatacgtcagacccaatcaaaatggacattattgtgagggcatgcgtgagagacactacactatcatcatacttgaatgtaatctctcgacag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30279042 |
gattgggcatacgtcagacccaatcaaaatggacattactgtgagggcatgcgtgagagacactacactatcatcatacttgaatgtaatctctcgacag |
30278943 |
T |
|
| Q |
119 |
ttgagtgccatatgatgaagatcgtagggtgatccatcaatctcaacatgaatccctcattgacctaaacaagtttttcattatcttttttgaaatctac |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
30278942 |
ttgagcgccatatgatgaagatcgtagggtgatccatcaatctcaacatgaatccctcattgacctaaataagtttttccttatcttttttgaaatctac |
30278843 |
T |
|
| Q |
219 |
atataaatggacctttgttataggaaaaatgtacgcaactaatatgttaaacctatcacccatctgatccaaaaaatgatttgagtattggtgtttttgc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
30278842 |
atataaatggacctttgttataggaaaaatgtacgcaactaatatgttaaacctatcacctatctgattcaaaaattgatttgagtattggtgtttttgc |
30278743 |
T |
|
| Q |
319 |
aggtacaagacccctatccgggagaactgccctggtcctcctccgcgcttaactccaacctttg |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30278742 |
aggtacaagacccctatccgggagaactgccctggtcctcctccgcgcttaactccaacctttg |
30278679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University