View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16732_high_2 (Length: 673)

Name: NF16732_high_2
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16732_high_2
NF16732_high_2
[»] chr4 (1 HSPs)
chr4 (14-656)||(53788292-53788934)


Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 14 - 656
Target Start/End: Complemental strand, 53788934 - 53788292
Alignment:
Q  14 tgaaatgaatgagagaagtatattggaataatagaataaaaagaagacgacaatcaaatgacatagtatggtattgatgaatcatacaaaaaggcctaga 113  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  53788934 tgaaatgaatgagagaagtatagtggaataatagaataaaaagaagacgacaatcaaatgacatggtatggtattgatgaatcatacaaaaaggcctaga 53788835  T
Q  114 tgtgtgggtggagcgaacgtgtaaggagattcaaaagtgttgggtcacgaggaggatgatcctccggactccccatcttgacacaaaggtggtatcttac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    |||||||||||||||||    
T  53788834 tgtgtgggtggagcgaacgtgtaaggagattcaaaagtgttgggtcacgaggaggataatcctccggactccccatctttttgcaaaggtggtatcttac 53788735  T
Q  214 atcatgatttaataagaatttgatcggtt-tttgtgttgaaagtctttctatcaatgtgttttgacggcgtgctctgctgaatgtcacaccaacgatgca 312  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||| |||||||||  |||||||||||||||||| ||||    
T  53788734 atgatgatttaataagaatttgatcggttctttgtgttgaaagtctttctatcacagtgttttgatggcgtgctccactgaatgtcacaccaacggtgca 53788635  T
Q  313 agtaagtgtatgtaaatgaaaaaacttccttgagtgatagcataatgaattgacatacttatatttatacatgagacgaagattgttgtgtagaaagtgt 412  Q
    |||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  53788634 agtaagtgtatgtagatgaaaaaacttccttaagtgggagcataatgaattgacatacttatatttacacatgagaagaagattgttgtgtagaaagtgt 53788535  T
Q  413 gaattaaaagtttcaccttacttnnnnnnntggggattgaattttataaattataggatccataaaattcaatatcttaaggttttatgttaaagtgtgg 512  Q
    |||||||||||||||| ||||||       |||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| ||||||||||||    
T  53788534 gaattaaaagtttcacgttacttagaaaaatggggattgaattttataaattataggacccat-aaatccaatatcttaaggttttaggttaaagtgtgg 53788436  T
Q  513 tgttcgactcacttatattgggatccccggttctcacacttcacatcatagcaaagatagagtgagtgggtaccattactcaccacgttttcttagccaa 612  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  53788435 tgttggactcacttatattgggattcccggttctcacacttcacatcatagcaaagatagagtgagtgggtaccattactcaccacggtttctcagccaa 53788336  T
Q  613 agttcaactctattagtttaagatgatgaatgaaacactgcaat 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  53788335 agttcaactctattagtttaagatgatgaatgaaacactgcaat 53788292  T

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